Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G19
(861 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 74 5e-12
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 71 5e-11
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 70 9e-11
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 61 4e-08
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 57 5e-07
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 50 1e-04
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 40 0.061
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 36 1.3
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 36 1.7
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 73.7 bits (173), Expect = 5e-12
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +3
Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
+V + RP +K E+VEAVTI+ TPPMV VG+ GY+ TP GL TV+AEH+S+ C+
Sbjct: 56 IVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECK 115
Query: 402 XRF 410
RF
Sbjct: 116 RRF 118
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 503 DXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
D M +YC V+ VIAHTQ++LL Q A M + GG + +K WA
Sbjct: 149 DFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWA 197
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 70.5 bits (165), Expect = 5e-11
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
+V +P +K E+VEAVTI+ TPPMV GV GY+ TP G T+WAEH+SE R
Sbjct: 56 IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115
Query: 402 XRF 410
RF
Sbjct: 116 RRF 118
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 69.7 bits (163), Expect = 9e-11
Identities = 38/88 (43%), Positives = 49/88 (55%)
Frame = +3
Query: 147 PRXXPNDPCSFELAYIXXXXPXXXPLVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVX 326
PR P+ P A++ L + RP K E VEAVTI+ TPP+V VGV
Sbjct: 33 PRDDPSQPVHLT-AFLGYKAGMTHTL-REVHRPGLKISKREEVEAVTIVETPPLVVVGVV 90
Query: 327 GYLXTPXGLXPXXTVWAEHMSEXCRXRF 410
GY+ TP GL T++AEH+S+ CR RF
Sbjct: 91 GYVATPRGLRSFKTIFAEHLSDECRRRF 118
Score = 48.8 bits (111), Expect = 2e-04
Identities = 24/58 (41%), Positives = 29/58 (50%)
Frame = +2
Query: 503 DXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWAXXTSGKTYP 676
D M +YC V+ VI HTQ+KLL Q A M L GG + +K WA K P
Sbjct: 149 DFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVP 206
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 60.9 bits (141), Expect = 4e-08
Identities = 30/63 (47%), Positives = 35/63 (55%)
Frame = +3
Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
+V RP +K E+VE VTI+ PPMV VG+ GY TP G TVWA H S R
Sbjct: 107 IVRDVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFR 166
Query: 402 XRF 410
RF
Sbjct: 167 RRF 169
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMS 389
++ K RP +K E+VE V I+ TPPMV +G+ GY+ P GL V+AEH+S
Sbjct: 56 IIQKVDRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHIS 111
Score = 35.1 bits (77), Expect = 2.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXG 619
+++ + M +YC V+ ++AHTQ+ LL Q A M + G
Sbjct: 141 EMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 49.6 bits (113), Expect = 1e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +3
Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
+V K RP +K E+VE VTI+ T P + VG G T GL +V+A+H+S C+
Sbjct: 37 VVRKVDRPGSKVHKKEVVEVVTIVETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECK 96
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 40.3 bits (90), Expect = 0.061
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 267 EIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMS 389
EI +AVT++ PPM + V GY TP G+ +WA+ S
Sbjct: 68 EIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 35.9 bits (79), Expect = 1.3
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 267 EIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSE 392
E VT++ TPPM V Y TP G P VWA+ E
Sbjct: 67 ETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHE 108
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 35.5 bits (78), Expect = 1.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 267 EIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWA 377
E+ +AVT++ PPM + V GY TP G WA
Sbjct: 68 EVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,357,277
Number of Sequences: 1657284
Number of extensions: 4701146
Number of successful extensions: 4233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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