Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G19
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    75   1e-14
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    75   1e-14

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 36/63 (57%), Positives = 42/63 (66%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    RP +K    EI+EAVTII TPPMV VGV GY+ TP GL    TVWAEH+SE  +
Sbjct: 56  IVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVK 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = +2

Query: 521 RYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWAXXTSGKT 670
           +YCSVV V+AHTQ++     Q  A  M   + GG + DK  WA     KT
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKT 202


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 35/63 (55%), Positives = 42/63 (66%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    RP +K    EI+EAVT+I TPPMV VGV GY+ TP GL    TVWAEH+SE  +
Sbjct: 56  IVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVK 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = +2

Query: 521 RYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWAXXTSGKT 670
           +YCSVV V+AHTQ++     Q  A  M   + GG + DK  WA     KT
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKT 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,939
Number of Sequences: 5004
Number of extensions: 17114
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)