Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G19
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    67   1e-11
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    66   4e-11

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 36/94 (38%), Positives = 48/94 (51%)
 Frame = +3

Query: 129 GWXTAXPRXXPNDPCSFELAYIXXXXPXXXPLVXKXXRPXTKPFLNEIVEAVTIIXTPPM 308
           G   + P+   N PC   L            +V +  +P +K    E  EAVTII TPP+
Sbjct: 27  GKVKSFPKDDVNKPC--HLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPI 84

Query: 309 VCVGVXGYLXTPXGLXPXXTVWAEHMSEXCRXRF 410
           V VG+  Y+ TP GL    +VWA+H+SE  R RF
Sbjct: 85  VVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRF 118



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 515 MIRYCSVVXVIAHTQL-KLLXQXQXXAXXMXXHLXGGXIDDKXXWAXXTSGKTYP 676
           M +Y SVV VI HTQ+ K+    Q  A  M   + GG I DK  +      K  P
Sbjct: 153 MKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIP 207


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/94 (37%), Positives = 48/94 (51%)
 Frame = +3

Query: 129 GWXTAXPRXXPNDPCSFELAYIXXXXPXXXPLVXKXXRPXTKPFLNEIVEAVTIIXTPPM 308
           G   + P+   + PC   L            +V +  +P +K    E  EAVTII TPP+
Sbjct: 27  GKVKSFPKDDVSKPC--HLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPL 84

Query: 309 VCVGVXGYLXTPXGLXPXXTVWAEHMSEXCRXRF 410
           V VG+  Y+ TP GL    +VWA+H+SE  R RF
Sbjct: 85  VIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRF 118



 Score = 35.5 bits (78), Expect = 0.055
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 515 MIRYCSVVXVIAHTQL-KLLXQXQXXAXXMXXHLXGGXIDDKXXWAXXTSGKTYP 676
           M +Y S+V VIAHTQ+ K+    Q  A  M   + GG I DK  +      K  P
Sbjct: 153 MKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIP 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,663
Number of Sequences: 37544
Number of extensions: 148036
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)