Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G19
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...    71   1e-12
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...    71   1e-12
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...    71   1e-12
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...    71   1e-12
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    47   2e-05
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    47   2e-05

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 147 EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 197


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 147 EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 197


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 147 EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 197


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 222 LVXKXXRPXTKPFLNEIVEAVTIIXTPPMVCVGVXGYLXTPXGLXPXXTVWAEHMSEXCR 401
           +V    +P +K    E+VEAVTI+ TPPMV  GV GY+ TP G     T+WAEH+SE  R
Sbjct: 56  IVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEAR 115

Query: 402 XRF 410
            RF
Sbjct: 116 RRF 118



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 147 EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 197


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 49  EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 99


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 497 DLDXRXMIRYCSVVXVIAHTQLKLLXQXQXXAXXMXXHLXGGXIDDKXXWA 649
           + D   + +YCS + VIAHTQ+K+L + Q  A  +   + GG I+ K  WA
Sbjct: 49  EADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWA 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,061,454
Number of Sequences: 27780
Number of extensions: 108685
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)