Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G17
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    44   2e-06
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    31   0.014
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 34/158 (21%), Positives = 63/158 (39%)
 Frame = +2

Query: 182 KYLVLTFNVLFAMSAVVLFGASRFLLYKLFIYRHFIGVNVEYPAILLLMMAIITCSIAWI 361
           KYL+  FN +FA+  + +      +  ++      I   + +P+I L+++  I   I++ 
Sbjct: 9   KYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFF 68

Query: 362 GWRTAVSXXXXXXXXXXXXXXXXXXXEFTCFVWAMVVWDNVEIDVKTTMTQFFEDTRGAD 541
           G   A+                    +    V+A +V  N + + +    ++ E   G  
Sbjct: 69  GCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDD-NFRNISEKYQEIFNGYF 127

Query: 542 ANSAESLKWDRLHVKFECCGVTGPNDYATSGHVPFSCC 655
            NS      D +    +CCGV   +DY     +P SCC
Sbjct: 128 LNSESKDFIDFIQKNLQCCGVHSLSDY-NDKPIPASCC 164


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 31.1 bits (67), Expect = 0.014
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 538 STPGVFEE-LRHGSFHVYLHIVPHHHSPHKAS 446
           STPG     + HG  H ++H  PHHH  H A+
Sbjct: 410 STPGPHHHTMGHG--HSHIHATPHHHHSHAAT 439


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 561 KDSAEFASAPLVS-SKNCVMVVFTSISTLSHTTIAHTKQVNSMITTSTIRIPVMI 400
           + S E A + L++ SKN  +V  + +    +    +T  VNS +T +    PV I
Sbjct: 496 RQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVNPVAI 550


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 324 NNRIAGYSTFTPIKCLYIKSLYNKNLLAP 238
           N++    S  TPIK +Y  ++  KN L+P
Sbjct: 21  NDKRIYLSPRTPIKNVYKNNIETKNQLSP 49


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 445 HLLCVGYG 468
           H+LC+GYG
Sbjct: 336 HMLCIGYG 343


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 445 HLLCVGYG 468
           H+LC+GYG
Sbjct: 304 HMLCIGYG 311


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/30 (23%), Positives = 14/30 (46%)
 Frame = +2

Query: 569 DRLHVKFECCGVTGPNDYATSGHVPFSCCG 658
           +++H+     G        T+GH+ + C G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGG 33


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/30 (23%), Positives = 14/30 (46%)
 Frame = +2

Query: 569 DRLHVKFECCGVTGPNDYATSGHVPFSCCG 658
           +++H+     G        T+GH+ + C G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGG 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,333
Number of Sequences: 438
Number of extensions: 4901
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)