Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G16
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   151   2e-37
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    50   6e-07
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    38   0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   4.6  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   6.1  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   8.1  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  151 bits (365), Expect = 2e-37
 Identities = 84/145 (57%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
 Frame = +3

Query: 315 DNLPPILYALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 491
           D+LP IL ALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V+D+GSPI IP
Sbjct: 73  DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132

Query: 492 VGAETLGRIINVIGEPIDERGPSQPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAP 671
           VG  TLGRI+NVIGEP+DERGP +  +         S      +     TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192

Query: 672 YAKXXXXXXXXXXXXXKTVLIMELI 746
           YA+             KTV I ELI
Sbjct: 193 YARGGKIGLFGGAGVGKTVFIQELI 217


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
 Frame = +3

Query: 381 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 557
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 558 SQPT---RLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAPYAKXXXXXXXXXXXXXKTV 728
            + T   R+ L  P +    T +C      TG+K +D + P  +             KT 
Sbjct: 149 IKTTERRRVQLKAPGILP-RTSVCEP--MQTGLKAIDSMVPIGRGQRELIIGDRQTGKTA 205

Query: 729 LIMELI 746
           + ++ I
Sbjct: 206 IALDTI 211


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 372 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 548
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID 
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117

Query: 549 RGPS 560
           +GP+
Sbjct: 118 KGPN 121


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 604 KLWSFGMDSSSLVGWDGPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVP 428
           KL + G   SS+ G    R++ G+P  +    R+++ PT I    PES       K S P
Sbjct: 141 KLSTGGSGGSSVTG---KRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAP 197

Query: 427 SM 422
           S+
Sbjct: 198 SL 199


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  ICDFRNQFDPTLLPFC*IFKNIIEMFPTVCRVGRLATKTVV 179
           I  F +Q  P +  FC +   +  + P+VCR+   +  TVV
Sbjct: 342 IISFNHQMIPHVSQFCHVRSYLSAILPSVCRIFLPSPGTVV 382


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 342 GHIGSAASCLQTEHPLRHQ*RQLP 271
           G  GSA SCL   H L H  +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 432 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 548
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,699
Number of Sequences: 5004
Number of extensions: 65872
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)