Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G16
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 37 0.018
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 35 0.098
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 32 0.52
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 2.1
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 30 2.1
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 30 2.8
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 29 3.7
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 28 8.5
04_03_1017 + 21747044-21748051 28 8.5
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 28 8.5
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 37.1 bits (82), Expect = 0.018
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPSQPTR 572
GE V + +GT G+ + +G ++ PV + LGRI N G+PID P P
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 573 LLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAPYAK 680
L + S TGI +D++ A+
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIAR 199
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 34.7 bits (76), Expect = 0.098
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 396 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPSQPTR 572
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID P P
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 573 LL 578
L
Sbjct: 124 YL 125
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 32.3 bits (70), Expect = 0.52
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -2
Query: 559 DGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCAT 380
DGPR L P V + G P ++ G PR PS P + PKC
Sbjct: 840 DGPRPPTTRAGPLPACPTVPGAPDPQDG-PGATAGRPRLSPSDPEVVGTEAE-CPKCAQL 897
Query: 379 SKTKRGDRFCTSRAYR 332
+ G FCT ++
Sbjct: 898 KLLREGAAFCTQDCFK 913
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 538 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 413
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 530 DYIDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNGTYSVLSQVLRHLQDQAGRSI 354
D+ DD +EG + +D +G A + YGL TV G +VL+Q+ + L++ S+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSV 222
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 439 PSVPSMAMVRTVFSPKCCATSK 374
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>01_06_0393 +
28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 492 VGAETLGRIINVIGEPIDERGPSQPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVD 659
VGA ++ +I++ P+ G + + MP SLST L S F+L G+ + D
Sbjct: 135 VGAVSMASLISMFASPLAVMGVVIRSESVEFMPFYLSLSTFLMSASFALYGLLLRD 190
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 417 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGP 557
I D E + P S S +P AE L I NV+GE +D+ GP
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGP 175
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 502 SAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAYRIGG 323
S P R P+ + P + P +PS A TV P+ + R C+SRA R+ G
Sbjct: 266 STPPPPRAASPDYTPSTPPSSP-LPSAAESFTVPPPRRYHPYQRSRSGGACSSRAIRVIG 324
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 530 DYIDDASEGFSSHRDTNG*ARVEYGL 453
DY+D A +G S H+ G + YGL
Sbjct: 177 DYVDPADQGSSDHKSIKGSLNLFYGL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,952,724
Number of Sequences: 37544
Number of extensions: 461842
Number of successful extensions: 1270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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