Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G16
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 175 3e-44
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 54 1e-07
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 36 0.050
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 34 0.15
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 33 0.35
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.62
Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40952-6|AAA81740.3| 328|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF016415-3|AAW88418.1| 658|Caenorhabditis elegans Hypothetical ... 29 4.4
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 5.8
Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical p... 28 7.6
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 175 bits (427), Expect = 3e-44
Identities = 99/206 (48%), Positives = 115/206 (55%), Gaps = 5/206 (2%)
Frame = +3
Query: 144 CRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKASXXXXXXXXXXXXXXXXXX----- 308
C + + + NN K + TG A + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 309 FEDNLPPILYALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRI 488
F++NLPPIL LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 489 PVGAETLGRIINVIGEPIDERGPSQPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLA 668
PVG ETLGRI+NVIGEPIDERGP + + +TGIKVVDLLA
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLA 203
Query: 669 PYAKXXXXXXXXXXXXXKTVLIMELI 746
PYAK KTVLIMELI
Sbjct: 204 PYAKGGKIGLFGGAGVGKTVLIMELI 229
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/122 (26%), Positives = 54/122 (44%)
Frame = +3
Query: 381 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPS 560
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GP
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 561 QPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAPYAKXXXXXXXXXXXXXKTVLIME 740
R K + L R +TG+K VD L P + KT + ++
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 182
Query: 741 LI 746
I
Sbjct: 183 TI 184
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/122 (26%), Positives = 54/122 (44%)
Frame = +3
Query: 381 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPS 560
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GP
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 561 QPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAPYAKXXXXXXXXXXXXXKTVLIME 740
R K + L R +TG+K VD L P + KT + ++
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 209
Query: 741 LI 746
I
Sbjct: 210 TI 211
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 35.5 bits (78), Expect = 0.050
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 393 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGP 557
+ +N +GT G+ + + +G +R PV + LGRI N G+PID +GP
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPID-KGP 125
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 525 VIGEPIDERGPSQPTRLLLSMPKLQSLSTCLCSRRFSLTGIKVVDLLAPYAKXXXXXXXX 704
V+G PID +GP R K + L R +TG+K VD L P +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162
Query: 705 XXXXXKTVLIMELI 746
KT + ++ I
Sbjct: 163 DRQTGKTAIAIDTI 176
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 468 SGSPIRIPVGAETLGRIINVIGEPIDERGPSQPTRLLLSMPKLQSLSTCLCSRRFSLTGI 647
+G R PV + LGRI N G+PID+ P P L + + + TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 648 KVVDLLAPYAK 680
+D++ A+
Sbjct: 169 SAIDVMNSIAR 179
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 432 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 548
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical
protein C08H9.1 protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 208 TSDAFSVALFTTVFVAKRPTLQTVGNISIIFLKI*QKGSKVGSNWLRKSQILYVTIRPVP 29
TS FSV LF +F++ + GN I LK+ N +K + R +P
Sbjct: 4 TSLVFSVLLFDLIFISNCDYIHLPGNSDIPDLKLQSGYLNANENGTQKMFYFLLEARDIP 63
Query: 28 MG 23
+G
Sbjct: 64 VG 65
>U40952-6|AAA81740.3| 328|Caenorhabditis elegans Hypothetical
protein C03B1.5 protein.
Length = 328
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 560 PTDKTAAIHAEAPEFVDMSVQQEILVNWYKSRRSARSL 673
P +++A+HA + ++ S Q ++N+YK R R +
Sbjct: 273 PEFRSSALHASSQTYLKTSCSQSEILNYYKRLRRTRGM 310
>AF016415-3|AAW88418.1| 658|Caenorhabditis elegans Hypothetical
protein C02A12.8 protein.
Length = 658
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = -1
Query: 296 YGTNNGNYLTLPFAGSLGCIVTFVHSGSSHQ*CFFSSIVYYCLRSQTAY---SADSRKHF 126
Y N+GN + S ++ F +S SH +S YY L+ A S DS
Sbjct: 433 YPKNDGNISVMTIGNSY--VMQFTNSIKSHFKQNYSDYWYYSLQEGFALYADSYDSGNAL 490
Query: 125 DNIFENLAERQQSRIELVTKITNSLRNDPSSAD 27
N+A+ + + ++ K + SLR + D
Sbjct: 491 KTFKRNVAQHKPDVLFIIAKYSQSLRTSFQAND 523
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 426 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 548
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191
>Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical
protein ZK892.2 protein.
Length = 118
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 125 DNIFENLAERQQSRIELVTKITNSLRNDPSSADGRMR 15
D IFE + ER + E+V K+ S R + ADG+ +
Sbjct: 6 DVIFEEIKERIATDKEMVKKVGTSFRMTIAGADGKTK 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,685
Number of Sequences: 27780
Number of extensions: 390820
Number of successful extensions: 1078
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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