Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G15
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.84 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.9  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   2.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   4.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   5.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   7.8  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 470 SSRRYRGRVSRLYTEQAPSLPPQQF 396
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 200 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 87
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 619 PRLTSLTKSKSKCPL--PTPLRRKSLRSESAVPQPLHCREKGPS 744
           P LTS   S    PL  P P R KSL +   V  P+   +  PS
Sbjct: 375 PALTSENLSSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPS 418


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 778 WLGHX--NFVFHWNWDLFLDSVGAGERH 701
           W  H   NF FHW W+ ++  V   + H
Sbjct: 444 WFSHHLSNFNFHWKWNEWIPDVELDDLH 471


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 598 STL*SQGPRLTSLTK-SKSKCPLPTPLRRKSLRSESAVPQPLHCREKGPSSS 750
           S L S  P   SLT+ S S    PT     SLRS+S V +      K PSSS
Sbjct: 568 SPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSS 619


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +1

Query: 592  KESTL*SQGPRLTSLTKSKSK---CPLPTPLRRKSLRSESAVPQPLHCREKGPSSSEIRS 762
            K S+L   G    SLT S S      LPTP R  S      +PQ     E   S+  I S
Sbjct: 3768 KSSSLGKIGSSSISLTLSSSSIRDAELPTPSRMTSPSLSETIPQSSSISEASTSNPNILS 3827


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 495 PYLSPTPSKRKFPLPSRNTSNTQY 566
           P++SP+P   K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +3

Query: 498 YLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYLMKSRSTFDKPYEVKVKVPTPYTVE 677
           +L  T S+R+   PSR+    +     +TP KR+ L +  S   +   V     TP  + 
Sbjct: 17  HLVGTLSQRRHFTPSRSRYTPRSAQRTVTPHKRRALARRNSLARRRSNV-FSATTPRDI- 74

Query: 678 KKILTK*KCRSPAPTLSRKRS 740
            ++L++   ++P P+ +   S
Sbjct: 75  LRMLSRALAKNPVPSPAESES 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,539
Number of Sequences: 5004
Number of extensions: 48586
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)