Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G14
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 157 2e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 1e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 3e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 8e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 4e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 43 6e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 8e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 1e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 3.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.8
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 7.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 157 bits (380), Expect = 2e-39
Identities = 69/81 (85%), Positives = 72/81 (88%)
Frame = +2
Query: 257 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 436
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 437 PEEHPVLLTEAPLNPKGQQRE 499
PEEHP LLTEAPLNPK + +
Sbjct: 98 PEEHPCLLTEAPLNPKSNREK 118
Score = 151 bits (367), Expect = 9e-38
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +1
Query: 598 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 777
IVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVR
Sbjct: 151 IVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210
Query: 778 DIKEXLCYVALDFEQEM 828
DIKE LCYVALDFEQE+
Sbjct: 211 DIKEKLCYVALDFEQEL 227
Score = 77.0 bits (181), Expect = 3e-15
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = +3
Query: 471 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 596
P P++NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTG
Sbjct: 109 PLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTG 150
Score = 70.1 bits (164), Expect = 4e-13
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 147 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.1 bits (226), Expect = 1e-20
Identities = 41/74 (55%), Positives = 55/74 (74%)
Frame = +1
Query: 598 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 777
+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR
Sbjct: 151 VVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVR 210
Query: 778 DIKEXLCYVALDFE 819
++KE LCYV+ D E
Sbjct: 211 EMKEKLCYVSYDLE 224
Score = 75.4 bits (177), Expect = 1e-14
Identities = 28/63 (44%), Positives = 48/63 (76%)
Frame = +2
Query: 293 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 472
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 473 LNP 481
+NP
Sbjct: 110 MNP 112
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +3
Query: 438 PRNTQSCSLRLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 596
PR + P P ANREKM + MFE + +YVAIQAVLSLYA G ++G
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSG 150
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 153 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 254
E A +V+DNG+G K G+A D+ PR FPS G+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 3e-20
Identities = 40/77 (51%), Positives = 59/77 (76%)
Frame = +1
Query: 598 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 777
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVR 215
Query: 778 DIKEXLCYVALDFEQEM 828
+IKE CYVA DF E+
Sbjct: 216 EIKEKCCYVASDFRSEI 232
Score = 82.2 bits (194), Expect = 8e-17
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +2
Query: 272 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 448
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 449 PVLLTEAPL 475
P+LLTE PL
Sbjct: 107 PLLLTEPPL 115
Score = 62.9 bits (146), Expect = 5e-11
Identities = 41/144 (28%), Positives = 60/144 (41%)
Frame = +3
Query: 165 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGKAPPSGX*WSVWDRRTLM*EMRHRAKXXXXX 344
+ +DNGSG KAGFAGDD P+ +FP+ G+ S + + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 345 XXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPSTPRANREKMTQIMFET 524
+ I S + P P N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 525 FNTPAMYVAIQAVLSLYASGRTTG 596
N PA+ ++Q VL+LYAS RTTG
Sbjct: 132 LNVPALSFSLQPVLALYASARTTG 155
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.9 bits (161), Expect = 8e-13
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 296 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 472
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 473 LNPKGQQRED 502
LNP + RE+
Sbjct: 133 LNPP-ENREN 141
Score = 62.5 bits (145), Expect = 7e-11
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 601 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIV 774
V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER--- 239
Query: 775 RDIKEXLCYVALDFEQEMA 831
IKE CYV D +E +
Sbjct: 240 --IKEECCYVCPDIVKEFS 256
Score = 46.0 bits (104), Expect = 7e-06
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +3
Query: 471 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 581
P P NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 165 LVVDNGSGMCKAGFAGDDAPRAVFPS 242
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.1 bits (139), Expect = 4e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +1
Query: 598 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 777
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 778 DIKEXLCYVALDFEQEM 828
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 338 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 481
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 150 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 254
+EV+A+V+D GS + GF+G+D P+ V PS G+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 480 PRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 593
P NR K + MFE+ PA Y+A Q + +ASG+ T
Sbjct: 110 PPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGT 147
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 284 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 460
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 461 TEAPLNP 481
TE NP
Sbjct: 121 TEPLANP 127
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 598 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 777
IVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 168 IVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAE 227
Query: 778 DIKEXLCYVALDFEQEMA 831
+ C+V+ D+ ++A
Sbjct: 228 LLMHDHCHVSSDYTHDIA 245
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 165 LVVDNGSGMCKAGFAGDDAPRAVF 236
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 456 CSLRLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLY 575
C + P R MT+++FE +N P++ I + S Y
Sbjct: 119 CMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 41.9 bits (94), Expect = 1e-04
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = +3
Query: 150 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRG-KAPPSGX*WSVWDRRTLM*EMRHRA 326
EE+ +LV+D GS + G+AG+++P + PS G ++ +G V D L
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDE--LQIHAPIPG 65
Query: 327 KXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPS-TPRANREKM 503
T TW R G+ V+P + + PS P++ R+++
Sbjct: 66 MEVKNGKSNGIIQDWESTLYTWER-GLKEKLQ--VNP--TEYAMMITEPSWNPQSVRQQI 120
Query: 504 TQIMFETFNTPAMYVAIQAVLSLYASGRTT 593
+ FE + PA Y+ QAV +A+ ++T
Sbjct: 121 MEAAFEQLHVPAFYLTKQAVCVAFANSKST 150
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 257 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 430
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 431 VAPEEHPVLLTEAPLNPKGQQRE 499
V P E+ +++TE NP+ +++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQ 119
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 601 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 747
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 454 PAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRC 573
P G+P P P P+SC + C S+PC C
Sbjct: 632 PVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPC 671
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 455 LLTEAPLNPKGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRX----SCWTPATV 622
L+ +A LN Q RE P +Q + + +++ + + + + S TP
Sbjct: 232 LMRQAMLN--NQSRETFPPTAAQLQQLKQLHYRQLQSVQQQQKQHQQKKTPQSGSTPQMQ 289
Query: 623 SPTPCPSTRDTHSP 664
+ T P+T DTH P
Sbjct: 290 NTTSQPTTHDTHPP 303
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 519 ETFNTPAMYVAIQAVLSLYASGRTTGYRAGLRRRCLPHRAHLRGIRTPPRHPASGLS--- 689
+ N A+ + I L S R T A + + +R +R P ASG++
Sbjct: 29 KVINLNALKMRISKKHQLSESPRLTDIIAAIPPDAYLKESLMRKLRAKPVRTASGIAVVA 88
Query: 690 -RSRPHRLPH 716
+PHR PH
Sbjct: 89 VMCKPHRCPH 98
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 192 TYRSHCLLPTRQLLRRTS*ISEI 124
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 7.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 353 PIEHGIVTNWDDMEKIWHHTF 415
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,607,634
Number of Sequences: 5004
Number of extensions: 80313
Number of successful extensions: 276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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