Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G13
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 105 8e-24
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 101 1e-22
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 29 0.81
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 3.3
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 3.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.3
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 27 4.3
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 5.7
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 7.5
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 26 7.5
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 7.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 10.0
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 105 bits (252), Expect = 8e-24
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = +1
Query: 115 AVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 294
++ + +LR+Q++ ++S F L I+QVGGREDSNVY+RMK +AA + GI+ EH+
Sbjct: 9 SLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANEAGISCEHV 68
Query: 295 RLPRDITEIELLAKITSLNESPSVHGIIVQMPL 393
P DITE +LL I NE P+VHGIIVQ+PL
Sbjct: 69 NFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPL 101
Score = 95.1 bits (226), Expect = 1e-20
Identities = 46/105 (43%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Frame = +2
Query: 410 IDAHRVTDAVSPD*DVDGLNTINEGRVAVGDLSG-FIPCTPAGCVELIKKTGVTIAGKNV 586
I+ +T+AV+P+ DVDG N G++ + F CTP G + ++K G+ + GK+
Sbjct: 105 INEQIITEAVAPEKDVDGFCETNLGKLTKREGQPLFTACTPKGIMCILKHYGINVQGKHA 164
Query: 587 VVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEITKTAEILV 721
VV+GRS IVG P+S LL+ +ATVT+CHSKT+++++I +TA+I+V
Sbjct: 165 VVIGRSNIVGRPMSILLEKANATVTLCHSKTESIADIVRTADIVV 209
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 101 bits (242), Expect = 1e-22
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +2
Query: 410 IDAHRVTDAVSPD*DVDGLNTINEGRVAVGDLSGF-IPCTPAGCVELIKKTGVTIAGKNV 586
++ VT++++P DVDG N G +A D + PCTP G +EL+K +++AG N
Sbjct: 136 LNERTVTESITPPKDVDGFGAFNIGLLAKNDATPIHYPCTPKGIMELLKDNKISVAGLNA 195
Query: 587 VVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEITKTAEILV 721
VVLGRS IVG P+S LL+ ++ATVTVCHSKTK+L + A++++
Sbjct: 196 VVLGRSDIVGNPISYLLRKDNATVTVCHSKTKDLIQHISNADLVI 240
Score = 83.8 bits (198), Expect = 3e-17
Identities = 40/88 (45%), Positives = 59/88 (67%)
Frame = +1
Query: 130 IENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIRLPRD 309
++ + ++V L++K F+P LAIVQVG REDSNVY+RMK KAA +GI ++ P
Sbjct: 45 LQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLVGIDFKYCPFPET 104
Query: 310 ITEIELLAKITSLNESPSVHGIIVQMPL 393
I LL ++ LN+ +VHG++VQ+PL
Sbjct: 105 IQMPALLHELKKLNDDHTVHGVLVQLPL 132
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 615 PTMRLRPSTTTFL-PAIVTPVFLISSTHPAGVQGMNPDRSPTATRPSLIVFKPSTS 451
P P+ +TF P++ +P F SST NP +P + P KPST+
Sbjct: 366 PLQNTNPAPSTFPNPSVASPAFPNSSTS-------NPSTAPASASPLASTLKPSTA 414
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 178 SGFEPRLAIVQVGGRE-DSNVYIRMKLKAAEKI 273
SGFE R+ I++ E DSN+YIR+K + K+
Sbjct: 11 SGFENRIKILEDLMNEFDSNLYIRLKRECDFKL 43
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 393 KGHLNNDAVNRRRFIQTRYF 334
KG+LNN A N+ F + R+F
Sbjct: 365 KGYLNNPAANKSSFTKDRFF 384
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -3
Query: 645 SHFSNSDTGVPTMRLRPSTTTFLPAIVTPVFLISSTHPAGVQGMNPDRSPTATRPSLIVF 466
S +SN T T+ P TT+F P+ T F+ SS+ + N TA+ S
Sbjct: 677 SFYSNVTTSSSTVSTPPPTTSF-PSTFTTSFITSSSLSSIPN--NSTEVKTASTSSGTEI 733
Query: 465 KPSTS*SGETAS 430
K +++ SG ++S
Sbjct: 734 KTASTSSGSSSS 745
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 112 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRM--KLKAAEK 270
E ++ S++ D+RQ++ +L + S E I + RE IRM +L++AE+
Sbjct: 30 EEIESSLK-DVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEE 83
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 142 LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 294
L + +T+LR+ + P A V G ED N+Y+ + + +H+
Sbjct: 223 LTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHV 273
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.5
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -3
Query: 435 ASVTR*ASIAWSEXKGHLNNDAVNRRRFIQTRYFC*QLYFSDVPW*--ADMFGGDTNFLS 262
AS+ R S E N AV R + YFC + W A F T+F S
Sbjct: 710 ASMVRLRSTFNEELVELFENMAV--RSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTS 767
Query: 261 CLQLHPDVDVGVLAPAHLHDGKPGLEAR 178
++ +PD+ V L L + PG++ +
Sbjct: 768 PIRRYPDIIVHRLLERSLKNTSPGIDKK 795
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 621 GVPTMRLRPSTTTFLPAIVT--PVFLISSTHP 532
G+PT+ L T + LPAI+ P F IS P
Sbjct: 235 GLPTLVLNVETVSNLPAIIKKGPKFFISMGRP 266
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 238 YIRMKLKAAEKIGIAAEHIRLPRDITEIELLAKI 339
YI KL A G+A + I DI E+E+LAKI
Sbjct: 23 YISPKLYIASS-GVAGDGIFSTFDIDELEVLAKI 55
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 599 RSRIVGTPVSELLKWEHATVTVCHSKTKNLSEITKTAEIL 718
R R + +P+ ++ EH T SKTKNL E K + L
Sbjct: 185 RGRSISSPMIDV---EHINSTAVPSKTKNLPEKPKRSHKL 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,295
Number of Sequences: 5004
Number of extensions: 61848
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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