Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G09
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 342 3e-95
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 193 2e-50
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 192 7e-50
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 174 1e-44
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 31 0.20
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 3.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.3
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.7
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 7.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 342 bits (841), Expect = 3e-95
Identities = 153/224 (68%), Positives = 180/224 (80%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 264
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 265 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 445 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 624
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 625 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 756
EPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y D
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDD 224
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 762 HLVXLTMSGVTTCLRFPGQLNAD 830
HLV M+GVTT RFPG+LN+D
Sbjct: 227 HLVSAVMAGVTTSFRFPGELNSD 249
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 193 bits (471), Expect = 2e-50
Identities = 91/228 (39%), Positives = 134/228 (58%), Gaps = 6/228 (2%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 246
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 247 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 426
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 427 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 606
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 607 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTY 750
VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTY 228
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 192 bits (467), Expect = 7e-50
Identities = 90/224 (40%), Positives = 131/224 (58%), Gaps = 2/224 (0%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 258
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 259 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 438
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 439 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 618
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 619 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTY 750
VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSY 224
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 174 bits (424), Expect = 1e-44
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Frame = +1
Query: 88 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 267
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 268 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 441
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 442 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 618
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 619 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTY 750
VV+PYN+ L++ +L N D +DN AL I L PT+
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTF 225
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 723 HSQTVHTHLR*XXHLVXLTMSGVTTCLRFPGQLNAD 830
H+Q H + LV MS TT LR+PG +N D
Sbjct: 219 HTQNPTFHQQ--NQLVSTVMSASTTTLRYPGYMNND 252
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 31.1 bits (67), Expect = 0.20
Identities = 32/132 (24%), Positives = 58/132 (43%)
Frame = +2
Query: 389 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 568
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 569 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKHTASTTRLYTTSASALSNCPHPL 748
+ ++ P P + S+++ +R S L QT T+ T + +++
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETS 335
Query: 749 TVTXPLSXPHNV 784
T ++ P V
Sbjct: 336 TKPKAVATPQKV 347
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 388 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 477
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 124 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 225
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 668 TQTKHTASTTRLYTTSASALSNCPHPLTV 754
T T +T + TTS S ++CP P T+
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTI 194
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 319 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 420
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 461 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 556
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 68 KITYTK*GKSFIYRPANVV 124
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.6
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 410 VLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSS-QRSVKSTPTES*THT 586
V SS + S+ S+ + A +Y AS+ +++ ++ SS+ S+ S T S T
Sbjct: 923 VTSSTLKPSLTSSVST--ASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLT-- 978
Query: 587 Q*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKHTASTTRLYTTSASALSNCPHPLTVTXPL 766
+P+ +LSS+ T L+ +S + + T+ +++ T+SAS S+ L + P+
Sbjct: 979 ---VKPE-SSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPV 1034
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,548
Number of Sequences: 5004
Number of extensions: 64459
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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