Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G04
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 476 PRAERLSGPDRSVVLHPSPSILMMNYTSITLLPQRTSGLRYMESRPVLTGKTS 634
           PR  R+    R + L   P+ILMM        P++T  LR+M   P +T  TS
Sbjct: 325 PRTHRMPQLIRKIFLKYLPTILMMR------RPKKTR-LRWMMEIPNVTLPTS 370


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 289 NSGPASIGQHAQQPDGINLRIHRE 218
           N GP  I  +A +   I L IHR+
Sbjct: 104 NKGPEGIQINATELQKIKLEIHRD 127


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 289 NSGPASIGQHAQQPDGINLRIHRE 218
           N GP  I  +A +   I L IHR+
Sbjct: 104 NKGPEGIQINATELQKIKLEIHRD 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 424 YANQIKQLLYNFPAKQLTTSGAPFW 498
           YA+ I+Q +   P KQLT +    W
Sbjct: 509 YASLIRQSIIESPDKQLTLNEIYNW 533


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 589 ATVYGIPSCVDRENIAKLA 645
           A +YGIP    R  + KLA
Sbjct: 614 AVIYGIPRSTLRNKVYKLA 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,959
Number of Sequences: 438
Number of extensions: 5736
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)