Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F24
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical...    31   0.81 
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    31   0.81 
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    31   0.81 

>AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5c protein.
          Length = 391

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/50 (40%), Positives = 21/50 (42%)
 Frame = +1

Query: 514 APRPPRREFGXXXXXXXXXXXXXXXXQDGAERRGPQDHRVSLVRDRAGRV 663
           AP PPRR FG                  G +RR  QDHR   VRD   RV
Sbjct: 304 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR---VRDDGRRV 350


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/50 (40%), Positives = 21/50 (42%)
 Frame = +1

Query: 514 APRPPRREFGXXXXXXXXXXXXXXXXQDGAERRGPQDHRVSLVRDRAGRV 663
           AP PPRR FG                  G +RR  QDHR   VRD   RV
Sbjct: 439 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR---VRDDGRRV 485


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/50 (40%), Positives = 21/50 (42%)
 Frame = +1

Query: 514 APRPPRREFGXXXXXXXXXXXXXXXXQDGAERRGPQDHRVSLVRDRAGRV 663
           AP PPRR FG                  G +RR  QDHR   VRD   RV
Sbjct: 484 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR---VRDDGRRV 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,662
Number of Sequences: 27780
Number of extensions: 244397
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)