Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F23
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.2  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.8  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
 Frame = +3

Query: 342 NQQFTITELED-PNASTDSQKPECKPTKTRVRGGKACAGQTIFEEQFDSLDENVWQIEQY 518
           NQ +  T  +  P+ S + Q P+       V   +      I    + +   N+      
Sbjct: 266 NQYYASTSKQSIPSQSQNLQPPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSR 325

Query: 519 IPI-YHPEYPFVSYQRNNLTVSTADGNLHINAKLQQHMPGFLDDSIY 656
            P  Y P  PF +YQ    + S     L    +    MP +   S+Y
Sbjct: 326 FPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVY 372


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 480 DSLDENVWQIEQYIPIYHPEYPFVSYQRNNLTV 578
           D+ D   W + QY+      YP + ++ + +TV
Sbjct: 32  DNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITV 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,462
Number of Sequences: 5004
Number of extensions: 74639
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)