Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F22
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    29   0.81 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    28   1.4  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    28   1.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.9  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   4.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.6  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   7.6  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 283 RTNW-HIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYS 176
           R  W  +YF +  TL  H+FF   +  F++  C  Y+
Sbjct: 61  RNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYT 97


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = -2

Query: 241 FMHLFFYWNMTFFYFCDCTIYSFIKVSTFMNC*YNLLNS*VCGA*HFFRFSIN--YGVEV 68
           F  L F W  TFF+   C I S I    F         +      HFF   ++  YG+  
Sbjct: 341 FYSLHFLWLCTFFHALQCAIISSIVSQWFFYRDTKSSATKTNLVSHFFYHVVSNQYGLCA 400

Query: 67  FCSSCYLKVKTRLSFFP 17
           F S   +  K  L F P
Sbjct: 401 FSSFLVVITKVPLHFLP 417


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 522 LIKYRHLDLSQLRLLPINIMYNYPGVESRNLAA--CPCRLSLIFHRIQSMQ 668
           LI   H+D   ++ L +N  YN  G+    L A  CP     +F  +QS Q
Sbjct: 243 LINVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQ 293


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 486 TVR*AHHNRPRFLIKYRHLDLSQLRLLPINI 578
           T+   HHN   F+ ++R +DL  L LL I +
Sbjct: 263 TLNLPHHNHVSFMTRFRKIDLKGLILLIIGV 293


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 292 WKCRTNWHIYFWFMFTLFMHLFFYWNMTFFYF 197
           W C   +H Y  ++  L   +FF W++ F +F
Sbjct: 428 WTCYP-YHPYVHWIVPLISSIFFGWSLLFVFF 458


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 488 SPVGTP--QPPAIPNQVSPPGPIPTQTFTNQHYVQLP 592
           SP+GT     PAI  QV+P  P P  T   +H+   P
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 476 SEIDSPVGTPQPPAIPNQVSPPGPIPTQTFT 568
           + + S V  P PPA P+Q  PP P PT   T
Sbjct: 264 NNLGSQVNIPPPPATPSQ--PPRP-PTNAST 291


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 283 RTNWHIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYSF 173
           +TN  I  + +  +   +F   N  FFY C C +Y +
Sbjct: 18  QTNTEILLFALVIILSVIFI--NFFFFYLCRCCVYFY 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,342
Number of Sequences: 5004
Number of extensions: 46260
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)