Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F22
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 564 LPINIMYNYPGVE 602
           LP+NI ++YPG E
Sbjct: 612 LPLNIRWSYPGEE 624


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 544 SRWRYLIRNRGRLWCAYRTVNFRL 473
           ++WR+L++    L C+ R +N RL
Sbjct: 68  NKWRFLLQCLEDLDCSLRKLNSRL 91


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 410 QYPQQRPITEVIG 448
           +Y Q +PI+EVIG
Sbjct: 951 EYYQNKPISEVIG 963


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,133
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)