Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F21
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       29   5.0  
02_05_0040 + 25341418-25341810                                         29   5.0  
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882...    28   8.7  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -3

Query: 340 VVVGXRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 161
           V+ G  H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 160 QGG 152
             G
Sbjct: 311 HPG 313


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 395 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 297
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>03_02_0487 +
           8821543-8821866,8821958-8822335,8822928-8823020,
           8823613-8824236
          Length = 472

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 LPPAQWHHVLE-LQVAAALKYPSRGPSLRVPSFLVQSGP 507
           LPP+      E   V+AA+K P+R P +R+P+  V+ GP
Sbjct: 417 LPPSDLKDSKEDKDVSAAVK-PARPPPIRIPAVAVRVGP 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,292,610
Number of Sequences: 37544
Number of extensions: 452407
Number of successful extensions: 1238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)