Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F17
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   5.0  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   6.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.7  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   8.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 513 FTDCFRCFFRFYWI 472
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 513 FTDCFRCFFRFYWI 472
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 513 FTDCFRCFFRFYWI 472
           F  CF CF   YWI
Sbjct: 350 FPVCFVCFNLMYWI 363


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 466 YGDPVEPEKAPEAISKAVATLPPE 537
           Y  P EPE APE  ++A A   PE
Sbjct: 20  YAAP-EPEPAPEPEAEADAEADPE 42


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 835 LXWXGGGPGXXXIXGXAGGG 776
           + W GG P    + G + GG
Sbjct: 193 IEWFGGNPKRITLIGLSAGG 212


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 835 LXWXGGGPGXXXIXGXAGGG 776
           + W GG P    + G + GG
Sbjct: 64  IEWFGGNPKRITLIGLSAGG 83


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 591 IRIILNTKFHLLHQFKHLFWRQCRHSFTDCFRCFFRFYWIT 469
           + +IL   FH L     +FW   R +    FR   +  W+T
Sbjct: 317 VTVILGLLFHALITLPTIFWFLTRQNPAAFFRGMMQ-AWMT 356


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 835 LXWXGGGPGXXXIXGXAGGG 776
           + W GG P    + G + GG
Sbjct: 193 IEWFGGNPKRITLIGLSAGG 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,347
Number of Sequences: 438
Number of extensions: 4380
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)