Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F16
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 77 2e-14
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 57 2e-08
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 42 5e-04
02_05_0250 + 27153048-27154453,27154546-27154885 40 0.002
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 35 0.093
05_02_0124 + 6849034-6851502 30 2.6
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 29 6.1
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 6.1
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 77.0 bits (181), Expect = 2e-14
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +2
Query: 338 CHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLIQSRETSNYHRCGRTD 514
C R + L++ Y G + G A + +T TVE +F+AL+RA L+ SR+ S Y RCGRTD
Sbjct: 89 CPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTD 148
Query: 515 KGVSSFGQVISICLRS 562
KGVS+ GQVIS+ LRS
Sbjct: 149 KGVSATGQVISLFLRS 164
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2
Query: 695 DFSARFDCKKRSYKYYFPHSGLNLPAMLEACRHMIGSHDFRHFCKMD 835
DF ARF C R YKY F LN+ M +A IG HD+R+FCKMD
Sbjct: 180 DFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKMD 226
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 56.8 bits (131), Expect = 2e-08
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Frame = +2
Query: 329 FEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQTVEYHLFEAL-KRACLIQSR----ETS 487
+E + V+LRV Y+G EY+GL Q + T+E L A+ K +++S +
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 488 NYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 667
+ R RTDKGV S +IS+ + E N P + I S +N LP +++V +
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWE-NDP----DGIALSNFINSNLPDNVRVFS 180
Query: 668 WMPIPQDRPDFSARFDCKKRSYKYYFP 748
+P + F R +C R Y Y P
Sbjct: 181 VLPAQR---SFDVRRECLYREYLYLLP 204
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 42.3 bits (95), Expect = 5e-04
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Frame = +2
Query: 359 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 538
LR S W+YQ + T++ + AL R + +E GRTD GV ++GQ
Sbjct: 18 LRRSLDRWQYQP------SPPTIQCSIENALTRITKLDRKELCLVG-AGRTDTGVHAWGQ 70
Query: 539 VISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIPQDRPDFSARFDC 718
V + C+ + +N LLP I+V I +P+F AR
Sbjct: 71 VAHFTTPFSY--------HCLDS---MHSAINGLLPHEIRV---REISAAKPEFHARTST 116
Query: 719 KKRSYKY--------------YFPHSG--LNLPAMLEACRHMIGSHDFRHF 823
+ + Y Y Y HS LN AM EA +H +G+HDF F
Sbjct: 117 RSKIYHYKIYNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSF 167
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +2
Query: 347 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETS-----NYHRCGR 508
R V + + Y G YQG+ Q+N +T+E L EAL RA + + + ++ R R
Sbjct: 49 RKVAILLGYCGAGYQGM--QKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAAR 106
Query: 509 TDKGVSSFGQVIS 547
TDKGVS+ QV+S
Sbjct: 107 TDKGVSAAAQVVS 119
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 34.7 bits (76), Expect = 0.093
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Frame = +2
Query: 275 TTPCDGQKQKKVDQ-REFMFEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQ-TVEYHL- 439
T P + Q K + R +E+ ++ VL SY G + G Q NT Q VE HL
Sbjct: 99 TAPSENQTSTKSSKDRGGRWERVTFKIVL---SYHGGSFDGWQKQPGLNTVQGLVEKHLG 155
Query: 440 -FEALKRACLIQSRETSNYHRC----GRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIR 604
F K+A +++R C GRTDKGV++ QV S ++ + K S I+
Sbjct: 156 QFVDEKKAKQLEARSLP-LEGCAVVAGRTDKGVTALQQVCSF-----YTWRKDVKSSDIK 209
Query: 605 NEIPYSKLLNRLLPKHIKVIAWMPIPQDRPDFSARFDCKKRSYKYYFP 748
+ I N+ P ++ + + Q +F F K R Y Y FP
Sbjct: 210 DAI------NKAAPDKLRP---LHVSQVSREFHPNFAAKWRRYLYIFP 248
>05_02_0124 + 6849034-6851502
Length = 822
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 437 LFEALKRACLIQSRETSNYHRCGRTDKGVSS--FGQVIS 547
L+E +C+ + R+ HR GR D G+SS F +IS
Sbjct: 420 LYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLIS 458
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +2
Query: 146 PPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREF 325
P K+ ++ + + D N+ + +I A NT+ N++++ C+ Q + + E
Sbjct: 338 PAKEWKPKSTKKSSNIDTDNNNGTD-VITTSASNTENSNVLDENALCEKTSQACIHEVEH 396
Query: 326 MFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVE 430
+ H LRV +E GL+VQE VE
Sbjct: 397 VIIPEH-----LRVP--EYEQTGLSVQEPVQLVVE 424
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 342 WHFSNINSLWSTFFCFWPSQGVVLFMMFFSCVL 244
W F + +L + F FW + V+ M F SC+L
Sbjct: 335 WEFLRLKALLA--FMFWGAPAVISIMTFASCIL 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,203,160
Number of Sequences: 37544
Number of extensions: 532377
Number of successful extensions: 1307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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