Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F16
(839 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK055702-1|BAB70990.1| 481|Homo sapiens protein ( Homo sapiens ... 196 1e-49
BC004822-1|AAH04822.1| 481|Homo sapiens pseudouridylate synthas... 195 1e-49
BC019320-1|AAH19320.2| 427|Homo sapiens pseudouridylate synthas... 47 1e-04
BC009505-1|AAH09505.2| 427|Homo sapiens pseudouridylate synthas... 47 1e-04
BC002901-1|AAH02901.1| 399|Homo sapiens pseudouridylate synthas... 47 1e-04
AF116238-1|AAD21042.1| 365|Homo sapiens pseudouridine synthase ... 47 1e-04
BC034304-1|AAH34304.1| 303|Homo sapiens pseudouridylate synthas... 34 0.56
AL139287-3|CAI23172.1| 303|Homo sapiens pseudouridylate synthas... 34 0.56
AK075292-1|BAC11527.1| 303|Homo sapiens protein ( Homo sapiens ... 34 0.56
AB018258-1|BAA34435.2| 1498|Homo sapiens KIAA0715 protein protein. 30 9.1
>AK055702-1|BAB70990.1| 481|Homo sapiens protein ( Homo sapiens
cDNA FLJ31140 fis, clone IMR322001218, highly similar to
Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
Length = 481
Score = 196 bits (477), Expect = 1e-49
Identities = 105/232 (45%), Positives = 148/232 (63%), Gaps = 7/232 (3%)
Frame = +2
Query: 164 NRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREFMFEKCH 343
+RN T E+LLK + +L +++ +L+ + K N G + K R F F
Sbjct: 7 DRNQT-EKLLKRVR-ELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTK---RAFDFSAHG 61
Query: 344 YRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGV 523
RHV LR++Y+GW YQG A QENT T+E LFEAL + L++SR+TSNYHRCGRTDKGV
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGV 121
Query: 524 SSFGQVISICLRSK----HSPEEQN---KPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIP 682
S+FGQVIS+ LRS+ E+ N + + EI Y+ +LNR+LP I+++AW P+
Sbjct: 122 SAFGQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV- 180
Query: 683 QDRPDFSARFDCKKRSYKYYFPHSGLNLPAMLEACRHMIGSHDFRHFCKMDV 838
P FSARF C +R+Y+Y+FP + L++ M A + +G+HDFR+ CKMDV
Sbjct: 181 --EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDV 230
>BC004822-1|AAH04822.1| 481|Homo sapiens pseudouridylate synthase 3
protein.
Length = 481
Score = 195 bits (476), Expect = 1e-49
Identities = 105/232 (45%), Positives = 148/232 (63%), Gaps = 7/232 (3%)
Frame = +2
Query: 164 NRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREFMFEKCH 343
+RN T E+LLK + +L +++ +L+ + K N G + K R F F
Sbjct: 7 DRNQT-EKLLKRVR-ELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTK---RAFDFSAHG 61
Query: 344 YRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGV 523
RHV LR++Y+GW YQG A QENT T+E LFEAL + L++SR+TSNYHRCGRTDKGV
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGV 121
Query: 524 SSFGQVISICLRSK----HSPEEQN---KPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIP 682
S+FGQVIS+ LRS+ E+ N + + EI Y+ +LNR+LP I+++AW P+
Sbjct: 122 SAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV- 180
Query: 683 QDRPDFSARFDCKKRSYKYYFPHSGLNLPAMLEACRHMIGSHDFRHFCKMDV 838
P FSARF C +R+Y+Y+FP + L++ M A + +G+HDFR+ CKMDV
Sbjct: 181 --EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDV 230
>BC019320-1|AAH19320.2| 427|Homo sapiens pseudouridylate synthase 1
protein.
Length = 427
Score = 46.8 bits (106), Expect = 1e-04
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Frame = +2
Query: 332 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 490
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 491 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 670
+ RC RTDKGVS+ GQV+S+ K I + + + +N LP HI+++
Sbjct: 139 FQRCARTDKGVSAAGQVVSL------------KVWLIDDIL---EKINSHLPSHIRILG- 182
Query: 671 MPIPQDRPDFSARFDCKKRSYKYYFP 748
+ + F+++ C R+Y Y P
Sbjct: 183 --LKRVTGGFNSKNRCDARTYCYLLP 206
>BC009505-1|AAH09505.2| 427|Homo sapiens pseudouridylate synthase 1
protein.
Length = 427
Score = 46.8 bits (106), Expect = 1e-04
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Frame = +2
Query: 332 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 490
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 491 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 670
+ RC RTDKGVS+ GQV+S+ K I + + + +N LP HI+++
Sbjct: 139 FQRCARTDKGVSAAGQVVSL------------KVWLIDDIL---EKINSHLPSHIRILG- 182
Query: 671 MPIPQDRPDFSARFDCKKRSYKYYFP 748
+ + F+++ C R+Y Y P
Sbjct: 183 --LKRVTGGFNSKNRCDARTYCYLLP 206
>BC002901-1|AAH02901.1| 399|Homo sapiens pseudouridylate synthase 1
protein.
Length = 399
Score = 46.8 bits (106), Expect = 1e-04
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Frame = +2
Query: 332 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 490
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 51 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 110
Query: 491 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 670
+ RC RTDKGVS+ GQV+S+ K I + + + +N LP HI+++
Sbjct: 111 FQRCARTDKGVSAAGQVVSL------------KVWLIDDIL---EKINSHLPSHIRILG- 154
Query: 671 MPIPQDRPDFSARFDCKKRSYKYYFP 748
+ + F+++ C R+Y Y P
Sbjct: 155 --LKRVTGGFNSKNRCDARTYCYLLP 178
>AF116238-1|AAD21042.1| 365|Homo sapiens pseudouridine synthase 1
protein.
Length = 365
Score = 46.8 bits (106), Expect = 1e-04
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Frame = +2
Query: 332 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 490
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 17 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 76
Query: 491 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 670
+ RC RTDKGVS+ GQV+S+ K I + + + +N LP HI+++
Sbjct: 77 FQRCARTDKGVSAAGQVVSL------------KVWLIDDIL---EKINSHLPSHIRILG- 120
Query: 671 MPIPQDRPDFSARFDCKKRSYKYYFP 748
+ + F+++ C R+Y Y P
Sbjct: 121 --LKRVTGGFNSKNRCDARTYCYLLP 144
>BC034304-1|AAH34304.1| 303|Homo sapiens pseudouridylate
synthase-like 1 protein.
Length = 303
Score = 34.3 bits (75), Expect = 0.56
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 23/179 (12%)
Frame = +2
Query: 356 LLRVSYLGWEYQGLAVQENTTQTV--EYHLFEALKRACLIQSRETSNYHRCGRTDKGVSS 529
L+ Y+G ++ G+A T + V + +L EA +R + S E + RTD GV +
Sbjct: 15 LVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAER---LNSVEPVRFTISSRTDAGVHA 71
Query: 530 FGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIPQDRPDFSAR 709
+ ++ + +P E+ L L I+V+ +P D F AR
Sbjct: 72 LSNAAHLDVQRR-----SGRPP-FPPEVLAEALNTHLRHPAIRVLRAFRVPSD---FHAR 122
Query: 710 FDCKKRSYKYYF---------------------PHSGLNLPAMLEACRHMIGSHDFRHF 823
R+Y Y P L++ AM EA +H++G+HDF F
Sbjct: 123 HAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAF 181
>AL139287-3|CAI23172.1| 303|Homo sapiens pseudouridylate
synthase-like 1 protein.
Length = 303
Score = 34.3 bits (75), Expect = 0.56
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 23/179 (12%)
Frame = +2
Query: 356 LLRVSYLGWEYQGLAVQENTTQTV--EYHLFEALKRACLIQSRETSNYHRCGRTDKGVSS 529
L+ Y+G ++ G+A T + V + +L EA +R + S E + RTD GV +
Sbjct: 15 LVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAER---LNSVEPVRFTISSRTDAGVHA 71
Query: 530 FGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIPQDRPDFSAR 709
+ ++ + +P E+ L L I+V+ +P D F AR
Sbjct: 72 LSNAAHLDVQRR-----SGRPP-FPPEVLAEALNTHLRHPAIRVLRAFRVPSD---FHAR 122
Query: 710 FDCKKRSYKYYF---------------------PHSGLNLPAMLEACRHMIGSHDFRHF 823
R+Y Y P L++ AM EA +H++G+HDF F
Sbjct: 123 HAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAF 181
>AK075292-1|BAC11527.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ90811 fis, clone Y79AA1000888, weakly similar to
TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70). ).
Length = 303
Score = 34.3 bits (75), Expect = 0.56
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 23/179 (12%)
Frame = +2
Query: 356 LLRVSYLGWEYQGLAVQENTTQTV--EYHLFEALKRACLIQSRETSNYHRCGRTDKGVSS 529
L+ Y+G ++ G+A T + V + +L EA +R + S E + RTD GV +
Sbjct: 15 LVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAER---LNSVEPVRFTISSRTDAGVHA 71
Query: 530 FGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMPIPQDRPDFSAR 709
+ ++ + +P E+ L L I+V+ +P D F AR
Sbjct: 72 LSNAAHLDVQRR-----SGRPP-FPPEVLAEALNTHLRHPAIRVLRAFRVPSD---FHAR 122
Query: 710 FDCKKRSYKYYF---------------------PHSGLNLPAMLEACRHMIGSHDFRHF 823
R+Y Y P L++ AM EA +H++G+HDF F
Sbjct: 123 HAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAF 181
>AB018258-1|BAA34435.2| 1498|Homo sapiens KIAA0715 protein protein.
Length = 1498
Score = 30.3 bits (65), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 166 VNLLFWWQFFHILTSLILLFQAHVVYFN 83
VNLLFW+QFF +S ++ +++FN
Sbjct: 1161 VNLLFWYQFFCGFSSSTMIDYWQMIFFN 1188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,783,274
Number of Sequences: 237096
Number of extensions: 3062747
Number of successful extensions: 7024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7018
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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