Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F15
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    32   0.12 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    29   0.65 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    28   2.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   4.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   6.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   8.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   8.0  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 742 FQFPSARLSKTIHTWDHSR---AECPYVNMCADFSVKV-PSPSGTTKCMPPWGDSSE--- 584
           F FPS  +   ++T+ +S    A+CP +  C  F VK  P+P+ T+   P   +SS+   
Sbjct: 128 FYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCI-FHVKFSPNPTQTSPGKPSTSESSQTDT 186

Query: 583 NSIPILSPRPSPTK 542
           ++ P  S  P+ T+
Sbjct: 187 STRPANSQTPTTTR 200


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 674 WTLCSTMVPCVDSFAEPCTWKLEFTVDECLTAV 772
           ++ CS + PCVD   E  TW+ E T+ + L+++
Sbjct: 159 YSTCSWL-PCVDGIWERSTWEFEITLPKTLSSL 190


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 525 PEEAAHLVGEGRGLR-IGIEF-SLESPQGGMHFVVPEG 632
           P EAAH  G GRG   I +   S  S  G M F++ EG
Sbjct: 235 PAEAAHAAGGGRGPELIALSHKSSNSKFGTMRFIIVEG 272


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 612 HFVVPEGEGTLTEKSAHMFTYGHSA 686
           H + PEG     + S + FT+GHSA
Sbjct: 572 HIMYPEGSPGFIQHSPNGFTHGHSA 596


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 778 HMNSCEAFINSEFQFPSARLSKTIHTWDHS 689
           H   C AF  SE    SA L +T+  WD S
Sbjct: 138 HYVMCAAFHPSEDLIVSASLDQTVRVWDIS 167


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 637 PSPSGTTKCMPPWGDSSENSIPILSPRPSPTK*AASS 527
           P PS   +  PP G+ S NS  +  P P P   AA S
Sbjct: 315 PPPSRRNRGKPPIGNGSSNS-SLPPPPPPPRSNAAGS 350


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 249 SLFPLNSKFDELI*MGD--NCRPYVL 178
           SLFPL+ +F +++ +G    C PYV+
Sbjct: 876 SLFPLSPRFSKMLIIGQQHGCLPYVI 901


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 481 RQTLTITQENFTFKYLKKQLT*LVKAEGSELVLNFHLNLPKGACILLYLR 630
           RQ   +   N    YL K++   +K    +L   FH   P  + +L Y R
Sbjct: 4   RQLFLLQNVNLESNYLLKRVCLSLKLSPCKLTRKFHHACPSSSKVLKYFR 53


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -1

Query: 444 PVISYLDRLDIYPEMGQSTENLLHIDHLSTLYIFEIASH 328
           P++ Y D  D++P +    E+ + + +L  +  ++   H
Sbjct: 6   PIVQYYDPFDLWPSIATDIESKIPLRNLQWVESYQYKKH 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,756,208
Number of Sequences: 5004
Number of extensions: 82178
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)