Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F15
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 1.2
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 31 1.6
01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518 30 2.8
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 3.7
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 29 4.8
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845 29 6.4
12_01_0364 + 2761529-2762452 28 8.5
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 28 8.5
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 698 PCVDSFAEPCTWKLEFTVDECLTAV 772
PC+DS + C + LEFTV L AV
Sbjct: 340 PCIDSATQRCPFDLEFTVSTNLVAV 364
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = -1
Query: 489 GLSSVLQLNDTERMLPVISYLD----RLDIYPEMGQSTENLLHIDHLSTLYIFEIASHLD 322
G S +++L +T L + YL+ R+ PE + +NL+H+D + ++ +++ HL
Sbjct: 671 GCSRLVELPETVGKLDALMYLNLSGSRIVELPESFRELKNLVHLDLSNCTHLTDVSEHLG 730
Query: 321 ECSVSY 304
+ Y
Sbjct: 731 SLNRLY 736
>01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518
Length = 217
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -1
Query: 522 FECEVLLSYGQGLSSVLQLNDTERMLPVISYLDRLDIYPEMGQST 388
F +V S QGLS + + T RML S D LD Y ++G+ST
Sbjct: 107 FTLKVDCSGRQGLSPLQKCTTTMRMLAYGSPADSLDEYLKIGKST 151
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 279 ELTVVPLKDNLRYIRLNAKQSRIYRVCLNDQYEANFQYFDPFLDICQADPNTRSLEAFSQ 458
E T +P+ + R+ L+ S + +C + + F+ FL C P RSL+AF Q
Sbjct: 1961 EETKIPVDIDERFASLS---SMVAVLCEQQLFLPLLRAFEMFLPSCSLLPFIRSLQAFCQ 2017
Query: 459 YHLTAA 476
L+ A
Sbjct: 2018 MRLSEA 2023
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 309 LRYIRLNAKQSRIYRVCLNDQYEANFQYFDPFLDICQADPNTRSLEAFSQYHLTAAQKTD 488
L R+ K++ I C +Q+ A+FQ + D +DP + S LT + K
Sbjct: 377 LEGFRVTYKKNEIMNACEFEQHSASFQLEKDYFDDAPSDPCSTQSSQESNIALTDSLKDS 436
Query: 489 PDHNSGELH 515
+ S L+
Sbjct: 437 TSNASSILN 445
>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
Length = 767
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -3
Query: 700 WDHSRAECPYVNMCADFSVKVPSPSGTTKCMPPWGDSS 587
W +A+C ++C FSV + + C+ +G+ +
Sbjct: 302 WSQPKAQCDVYSLCGPFSVCTENAMASCSCLRGFGEQN 339
>12_01_0364 + 2761529-2762452
Length = 307
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 417 QADPNTRSLEAFSQYHLTAAQKTDPDHNSGELHIQIPEEA 536
+A T++ ++Y AA D DHN+ + +Q+P A
Sbjct: 138 RAPSGTKTRWKMNEYKAVAAAAADDDHNAAGVAVQLPPMA 177
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 661 CADFSVKVPSPSGTTKCMPPWGDSSENSIPILSP 560
C ++ +P P TT +PP + S + PIL P
Sbjct: 155 CLGVAMGLPPPGLTTPSLPPSSEKSPVTFPILVP 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,633
Number of Sequences: 37544
Number of extensions: 489966
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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