Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F15
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   8.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 690 LWSHVWIVLLSLALGNWNSLLMNASQLFMWRTSXCYYXPDHRRKTFI 830
           +W  +WIV L+LA G           ++ W      +  D+ R T I
Sbjct: 1   MWHFLWIVFLALANGE------EIKTIYSWNVIEYNFPNDNIRNTLI 41


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 486 LSSVLQLNDTERMLPVISYLDRLDIY 409
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVY 286


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 486 LSSVLQLNDTERMLPVISYLDRLDIY 409
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVY 286


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 486 LSSVLQLNDTERMLPVISYLDRLDIY 409
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 200 LTMTTLMSSTNAALPKISYVKSIDVY 225


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 18/81 (22%), Positives = 32/81 (39%)
 Frame = +1

Query: 448 HSLSII*LQHRRQTLTITQENFTFKYLKKQLT*LVKAEGSELVLNFHLNLPKGACILLYL 627
           H LS   L H    ++  QEN T K +  ++  +     S +  N + N P    +    
Sbjct: 222 HRLSSHTLNHNSDKMSDQQENLTLKEVDNKVYGMAL---SPVTHNLYYNSPSSENLYYVN 278

Query: 628 REKVL*QRNQRTCLHMDTLLD 690
            E ++   NQ   +  + + D
Sbjct: 279 TESLMKSENQGNDVQYERVQD 299


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 528 EEAAHLVGEGRGLRIGIEFSLESPQGGMHFVVPE 629
           E    + GE R   I  + S+E P   +H V PE
Sbjct: 11  EYIRQVYGEDRWEEIRRQASVEQPSFSVHQVYPE 44


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 678 HSARLWSHVWIVLLSLAL 731
           H+  L S VWI  LSL+L
Sbjct: 14  HAVILASFVWIYALSLSL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,079
Number of Sequences: 438
Number of extensions: 5798
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)