Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F10
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 41 2e-04
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 0.002
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 35 0.012
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 35 0.016
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.029
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 33 0.050
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 32 0.087
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.12
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 31 0.20
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 30 0.47
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.61
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 0.81
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 29 0.81
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.4
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 1.4
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 28 1.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.5
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 3.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 4.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 4.3
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 4.3
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 4.3
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 4.3
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 4.3
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 5.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 7.6
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 7.6
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.6
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 7.6
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 7.6
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 7.6
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH PV +VA++PDG T+A G++I+ ++ +++ + FS + + +
Sbjct: 503 GHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVL 562
Query: 634 ATGGHTGKVTVYGI 675
+GG V + +
Sbjct: 563 VSGGSDCTVRAWDV 576
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GHE PV S++ + G +A I E SD+ + F PDG +V
Sbjct: 465 GHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKEV 524
Query: 634 ATGGHTGKVTVYGIINGTVDKVLDTRGKL 720
G++T + + G ++D R L
Sbjct: 525 CVASLDGQLTFWNVQEGKQTSLIDGRKDL 553
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 35.1 bits (77), Expect = 0.012
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH V+SVAVSPD GQ Q + + + FSPDG Q
Sbjct: 536 GHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQF 595
Query: 634 ATGGHTGKVTVYGI 675
A+G + ++ I
Sbjct: 596 ASGSGDLRARIWSI 609
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 740 PDGRYIXSGAEGGSVYLFDVSXGK 811
PDG+Y+ +G E + L+D+S K
Sbjct: 370 PDGKYLVTGTEDRQIKLWDLSTQK 393
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 439 YTPSXGHEMPVVSVAVSPDGETIA 510
Y GH+ V+SV SPDG A
Sbjct: 573 YLTCQGHKNSVISVCFSPDGRQFA 596
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 34.7 bits (76), Expect = 0.016
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +1
Query: 457 HEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVA 636
H S +SPDG+TIA KI E+ T I +SP+G +
Sbjct: 102 HPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISELDTKGKFGLCIDYSPNGRFIV 161
Query: 637 TGGHTGKVTVYGIINGTVDKVL 702
+G TG++ + G + VL
Sbjct: 162 SGHQTGQLFLISTETGRLFHVL 183
Score = 33.9 bits (74), Expect = 0.029
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH PV SVA SP +A G ++ +++ ++ ++ + F+P G +
Sbjct: 185 GHTSPVRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQVGQLRGHAAWIFAVAFNPVGDLL 244
Query: 634 ATGGHTGKVTVYGI 675
+ GK+ ++ I
Sbjct: 245 LSADVEGKIKIWDI 258
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 589 SDMWKIVFSPDGSQVATGGHTGKVTVYGIINGTVDKVLDTRGKL-LCL 729
S+ W SPDG +A G++ V+ + LDT+GK LC+
Sbjct: 104 SECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISELDTKGKFGLCI 151
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +1
Query: 487 SPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTV 666
SP+G I G+ + +S + + FSP + +A G + +T+
Sbjct: 154 SPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSPGSTLLAAAGDSKMITI 213
Query: 667 YGIINGTVDKVLDTRG 714
Y +++G D+V RG
Sbjct: 214 YDVLSG--DQVGQLRG 227
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 740 PDGRYIXSGAEGGSVYLFDVSXGK 811
P+GR+I SG + G ++L G+
Sbjct: 155 PNGRFIVSGHQTGQLFLISTETGR 178
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.9 bits (74), Expect = 0.029
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GHE + S+ S DG+T+ G++ + TD + ++FSPDG +
Sbjct: 374 GHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDG-VTTVMFSPDGQFI 432
Query: 634 ATG 642
A G
Sbjct: 433 AAG 435
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 258 TIHSVLLKKENAHEDLIYGCAWANINHSTDSKGPSKDYIVTGGLDNLVKVWSYE 419
T L+++ + HE+ +Y A++ P Y+V+G LDN +K+W +
Sbjct: 445 TSSGTLVEQLHGHEESVYSVAFS----------PDGKYLVSGSLDNTIKLWELQ 488
Score = 29.1 bits (62), Expect = 0.81
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 469 VVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVATG 642
V +V SPDG+ IA G + ++ ++ + FSPDG + +G
Sbjct: 420 VTTVMFSPDGQFIAAGSLDKVIRIWTSS-GTLVEQLHGHEESVYSVAFSPDGKYLVSG 476
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH+ ++SV VSPDG+ I +Q ++ + + SP+G
Sbjct: 510 GHKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSPNGHCF 569
Query: 634 ATG 642
ATG
Sbjct: 570 ATG 572
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +1
Query: 457 HEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSS----DMW--KIVFSP 618
H + V S DG+ +A G+ I +Q +SS D++ + FSP
Sbjct: 286 HTSVICYVRFSADGKFLATGCNRAAMVFNVET-GKLITLLQEESSKREGDLYVRSVAFSP 344
Query: 619 DGSQVATGGHTGKVTVYGIINGTVDKVL 702
DG +ATG ++ ++ I V ++L
Sbjct: 345 DGKYLATGVEDQQIRIWDIAQKRVYRLL 372
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 713 ESYYVCCLEPDGRYIXSGAEGGSVYLFDV 799
ES Y PDG+Y+ SG+ ++ L+++
Sbjct: 459 ESVYSVAFSPDGKYLVSGSLDNTIKLWEL 487
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGE 501
GHE V SVA SPDG+
Sbjct: 456 GHEESVYSVAFSPDGK 471
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 33.1 bits (72), Expect = 0.050
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 330 INHSTDSKGPSKDYIVTGGLDNLVKVWSYE 419
+N+ K Y++T G DNL+KVW Y+
Sbjct: 187 VNYVNYYPAGDKPYLITAGDDNLIKVWDYQ 216
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH PV V++SP E I I + ++ +W + FSP G
Sbjct: 401 GHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYF 460
Query: 634 ATGGH 648
AT H
Sbjct: 461 ATASH 465
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/84 (25%), Positives = 35/84 (41%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH V VA P G+ + G ++ + S ++ I PDGS V
Sbjct: 263 GHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLV 322
Query: 634 ATGGHTGKVTVYGIINGTVDKVLD 705
++GG+ ++ + +G VLD
Sbjct: 323 SSGGNDAIGRIWDLRSGKSIMVLD 346
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 633
GH + S+A PDG ++ G+ I + + + +SP+G Q+
Sbjct: 305 GHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQL 364
Query: 634 ATGGHTGKVTVYGI 675
AT V ++ +
Sbjct: 365 ATSSADDTVKIWDL 378
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 734 LEPDGRYIXSGAEGGSVYLFDVSXGKXCTEXGP 832
+ PDG +G E G + F+ S G T+ GP
Sbjct: 341 VHPDGNLFVAGLENGELRFFETSSGNELTKFGP 373
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/73 (20%), Positives = 30/73 (41%)
Frame = +1
Query: 457 HEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVA 636
H+ V ++ VS DG IA G+ + ++ +W F+P Q+A
Sbjct: 464 HDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLA 523
Query: 637 TGGHTGKVTVYGI 675
+G + ++ +
Sbjct: 524 SGSGDRTIRIWNV 536
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVW 410
P+ + TGG + LVKVW
Sbjct: 113 PTNTLLATGGAEGLVKVW 130
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.61
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 330 INHSTDSKGPSKDYIVTGGLDNLVKVWSYENN 425
I H + P + YIV+G D+ ++VW N
Sbjct: 446 IRHGVEIVEPDQPYIVSGSRDHTLRVWKLPKN 477
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 571 EIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVYGIINGTVD 693
++Q ++ +W + FSP+G+ +A+ + G V ++ I+ D
Sbjct: 462 QLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNED 502
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 354 GPSKDYIVTGGLDNLVKVWSYE 419
GP K + T G DNLVK+W+++
Sbjct: 170 GPKK--LATAGCDNLVKIWAFD 189
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 372 IVTGGLDNLVKVWSYENNKLELLHTL 449
+ T D +KV+S ENN+ LL TL
Sbjct: 24 LATCSSDQTIKVFSIENNQQTLLETL 49
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYENNKL 431
P++ V+GG D V VW+Y++ KL
Sbjct: 63 PTQPLFVSGGDDYKVNVWNYKSRKL 87
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYENNKLE 434
PS+D IV+ LD V+VW +++
Sbjct: 147 PSEDLIVSASLDQTVRVWDISGLRMK 172
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 369 YIVTGGLDNLVKVWSYENN 425
++ TG DN VKVW E N
Sbjct: 313 FLYTGAFDNAVKVWDMEGN 331
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYENN 425
P + VTGG D +VKVW N
Sbjct: 556 PKGNLFVTGGSDGIVKVWDLRLN 578
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 562 KIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVY 669
++ + + ++ + + +SPDG +A G +GKV +Y
Sbjct: 471 EVAQCKDSTAPITCLAYSPDGKYLACGDASGKVVLY 506
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 725 VCCL--EPDGRYIXSGAEGGSVYLFDVSXGKXCT 820
+ CL PDG+Y+ G G V L+D + + T
Sbjct: 482 ITCLAYSPDGKYLACGDASGKVVLYDANSREVIT 515
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYE 419
P I TGGLD +++WS E
Sbjct: 28 PDGSRIATGGLDGTIRIWSTE 48
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 595 MWKIVFSPDGSQVATGGHTGKVTVY 669
++ I PDGS++ATGG G + ++
Sbjct: 21 IFSIHIHPDGSRIATGGLDGTIRIW 45
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +3
Query: 336 HSTDSKGPSKDYIVTGGLDNLVKVWSYENN 425
H D Y++T D L+K+W Y+ +
Sbjct: 138 HKLDISSFHPSYVLTASQDGLIKLWDYKES 167
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 285 ENAHEDLIYGCAWANINHSTDSKGPSKDYIVTGGLDNLVKVWS---YENNKLE 434
EN+ E+++ C + N S+ K+ +TG D ++++W N KLE
Sbjct: 2428 ENSDENILCSCFYTGAN----SEWLHKNLFITGHPDGIIRIWEKRLQSNAKLE 2476
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 246 MPSNTIHSVLLKKENAHEDLIY 311
+PS++ H VL+++ N H DL Y
Sbjct: 1250 VPSSSHHDVLMEENNVHLDLTY 1271
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 604 IVFSPDGSQVATGGHTGKVTVYGIINGTVDKVLDTRGKLLCLL--PGARW 747
+ SPDGS A+GG G + ++ + T L+ + + L+ P W
Sbjct: 198 VTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYW 247
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYENNKLELLHTL 449
PS+ ++ G D +++W+ E+ ELL TL
Sbjct: 627 PSRQQCISAGTDAKIRIWNLESG--ELLQTL 655
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 348 SKGPSKDYIVTGGLDNLVKVWSYENNKLE 434
S P+K +I T D +K+WS +LE
Sbjct: 61 SVSPNKRWIATSSSDGTIKIWSALTFRLE 89
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVWSYENNKL 431
P Y+ + G D +VK W E NK+
Sbjct: 215 PRHPYLFSCGEDKMVKCWDLETNKV 239
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 369 YIVTGGLDNLVKVWSYENNK 428
Y+VT G D+L+KVW K
Sbjct: 279 YMVTAGADSLLKVWDLRTYK 298
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 357 PSKDYIVTGGLDNLVKVW 410
PSK + +G DNLVK W
Sbjct: 216 PSKGLLASGSKDNLVKFW 233
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 614 ENTIFHISELSVCISRIFCPSKRSHMISEESRDVLAIVSPSGLTATDTTGISCPXE 447
ENT + I E S R+F P ++ S E + I ++ TGI+ P +
Sbjct: 107 ENT-YQIREESTSSVRVFLPDEQGSYTSNEIKTGYVITETPKISQNIDTGITIPTQ 161
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.7
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETI 507
GH+ P++ +A++PDG+ +
Sbjct: 366 GHQEPILCMAITPDGKRV 383
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 677 SMELWIKC*IRGESYYVCCLEPDGRYIXSGAEGGSVYLFDV 799
S+EL K +S + DG Y+ G+E V+++D+
Sbjct: 481 SLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDL 521
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +1
Query: 454 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPD 621
GH++PV+S+ +S D + + G + I + ++ F PD
Sbjct: 574 GHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQPD 629
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 363 KDYIVTGGLDNLVKVWSY--ENNKLELL 440
KDY+ T L + V V+ Y ENN L L+
Sbjct: 932 KDYVYTSSLRDSVAVFQYDSENNSLNLV 959
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 165 CVNYLILFVADNNLPIASLRAI*TYLKMPSNTIHSVLLKKENA 293
CVN L+ + A+ ++P R YL HS+L NA
Sbjct: 384 CVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHSLLQSNSNA 426
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 465 ACCISCC*S*WRNNRKHI-PGLLTYHMGSLRWTKNTRN 575
ACC + C S W N+ +++ P +L M + RW ++R+
Sbjct: 169 ACCSTSCPSYWWNSEEYLGPAVL---MQAYRWIIDSRD 203
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 363 KDYIVTGGLDNLVKVWSYE 419
+D +TG D L+K+W+ E
Sbjct: 148 EDIFITGSADKLIKIWNGE 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,953
Number of Sequences: 5004
Number of extensions: 65546
Number of successful extensions: 307
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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