Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F07
         (1045 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     29   4.6  
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639     29   4.6  

>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 119 LDSFLCIGLLRPVTNIFVTTARFSK 45
           LD+ LC GLL PV+N  V  A F++
Sbjct: 56  LDAGLCFGLLDPVSNAIVNAAVFAE 80


>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
          Length = 649

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 119 LDSFLCIGLLRPVTNIFVTTARFSKLIXLL 30
           L + LC+G L PV+NI V T  + K + ++
Sbjct: 9   LKAGLCVGFLDPVSNIVVNTITYKKRVPVV 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,335
Number of Sequences: 37544
Number of extensions: 127682
Number of successful extensions: 213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3082779744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)