Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F06
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.9  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   8.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 362 PSGYIRSAFGTPISTGRPATVE 383


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 430 PSGYIRSAFGTPISTGRPATVE 451


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  PTGWISHSFGKPLNRSR*TTTD 77
           P+G+I  +FG P++  R  T +
Sbjct: 430 PSGYIRSAFGTPISTGRPATVE 451


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 187 PSRHYRSGLR 158
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 250 RWSCLWASGHQAGCRAPGSKAPSRHYR 170
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 250 RWSCLWASGHQAGCRAPGSKAPSRHYR 170
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 250 RWSCLWASGHQAGCRAPGSKAPSRHYR 170
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 MARCPQTRPSGVETILSTLSSARPE 295
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,798
Number of Sequences: 438
Number of extensions: 5423
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)