Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F04
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 345 5e-96
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 339 2e-94
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 293 2e-80
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 243 3e-65
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 182 7e-47
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 138 7e-34
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 117 2e-27
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 107 2e-24
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 30 0.47
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.8
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.8
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 7.6
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 345 bits (848), Expect = 5e-96
Identities = 177/278 (63%), Positives = 198/278 (71%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 182
+ EPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 171 INEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230
Query: 183 FDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGID 362
FD+R+VNHF+QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIE+DSLFEGID
Sbjct: 231 FDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGID 290
Query: 363 FYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 542
FYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ D
Sbjct: 291 FYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSD 350
Query: 543 FFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQXXXXXXVTPXXPRY*DCWRCXXX 722
FFNGKE KSINPDE +L GD SE+ Q V P
Sbjct: 351 FFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTP 410
Query: 723 XXXXXXXXXXXTDSDIHHLL*XXPGXXIXVFEGXRAMT 836
PG I VFEG RA T
Sbjct: 411 LIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERART 448
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/40 (55%), Positives = 23/40 (57%)
Frame = +1
Query: 679 PXSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPG 798
P S+GIETAGGVMT LIKRN YSD PG
Sbjct: 396 PLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPG 435
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 339 bits (834), Expect = 2e-94
Identities = 175/278 (62%), Positives = 197/278 (70%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 182
+ EPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 171 INEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230
Query: 183 FDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGID 362
FD+R+VNHF QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIE+DSL+EGID
Sbjct: 231 FDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGID 290
Query: 363 FYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 542
FYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ D
Sbjct: 291 FYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSD 350
Query: 543 FFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQXXXXXXVTPXXPRY*DCWRCXXX 722
FFNGKE KSINPDE IL GD SE+ Q V P
Sbjct: 351 FFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTP 410
Query: 723 XXXXXXXXXXXTDSDIHHLL*XXPGXXIXVFEGXRAMT 836
PG I VFEG RA T
Sbjct: 411 LIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERART 448
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/40 (55%), Positives = 23/40 (57%)
Frame = +1
Query: 679 PXSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPG 798
P SLGIETAGGVMT LIKRN Y+D PG
Sbjct: 396 PLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPG 435
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 293 bits (719), Expect = 2e-80
Identities = 136/195 (69%), Positives = 166/195 (85%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 182
+ EPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGED
Sbjct: 175 INEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGED 234
Query: 183 FDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGID 362
FDN +V HF+QEFKRK K D++ + RALRRLR+ACERAKR LSS TQ ++E+DSL GID
Sbjct: 235 FDNALVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGID 294
Query: 363 FYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 542
F +SITRARFE++NA F++T++PV K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ D
Sbjct: 295 FSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSD 354
Query: 543 FFNGKELNKSINPDE 587
FF+G+ LNKSINPDE
Sbjct: 355 FFDGRALNKSINPDE 369
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 243 bits (594), Expect = 3e-65
Identities = 112/215 (52%), Positives = 162/215 (75%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 182
+ EPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGED
Sbjct: 204 VNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGED 262
Query: 183 FDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGID 362
FDNR++N+ + + RK D+ + +A+ +L+ E+AKRTLSS IE++S F G D
Sbjct: 263 FDNRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQD 322
Query: 363 FYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 542
F +++RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+
Sbjct: 323 FSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLES 382
Query: 543 FFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEE 647
FF GK+ +K INPDE +L G++ +
Sbjct: 383 FF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSD 416
Score = 33.5 bits (73), Expect = 0.038
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 679 PXSLGIETAGGVMTTLIKRN 738
P +LGIET GGVMT LI RN
Sbjct: 425 PLTLGIETTGGVMTKLIGRN 444
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 182 bits (442), Expect = 7e-47
Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 4/214 (1%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 182
+ EPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGED
Sbjct: 217 VNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGED 274
Query: 183 FDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGI- 359
FD +V H V+ FK+ DL+ ++ A++R+R A E+AK LSS ++ I + +
Sbjct: 275 FDVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADAT 334
Query: 360 ---DFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 530
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V +
Sbjct: 335 GPKHINMEISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVE 394
Query: 531 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHG 632
++ F +E KS+NPDE +L G
Sbjct: 395 TVKSIFK-REPAKSVNPDEAVAIGAAIQGGVLSG 427
Score = 33.1 bits (72), Expect = 0.050
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +1
Query: 679 PXSLGIETAGGVMTTLIKRN 738
P SLGIET GGV T LI RN
Sbjct: 439 PLSLGIETLGGVFTRLINRN 458
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 138 bits (335), Expect = 7e-34
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 170
+ + AAA+ YG+ K E R V I D G + VSI+ G F +KST D +L
Sbjct: 175 MNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNL 234
Query: 171 GGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLF 350
G + D ++++F EFK KYK D+ +N +A RL TA ER K+ LS++ A + ++ +
Sbjct: 235 GSRNMDKALIDYFAAEFKEKYKIDVLSNPKATFRLATAVERLKKVLSANANAPLNVEMIM 294
Query: 351 EGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 530
ID + I R+ FEEL L P+EK+L A + K ++ I +VGG TR+P V++
Sbjct: 295 NDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVPIVKE 354
Query: 531 LLQDFFNGKELNKSINPDE 587
++ ++F GK L+ ++N DE
Sbjct: 355 VIANYF-GKGLSFTLNQDE 372
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 117 bits (282), Expect = 2e-27
Identities = 57/188 (30%), Positives = 108/188 (57%)
Frame = +3
Query: 9 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 188
+P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D +LGGE
Sbjct: 199 DPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLT 258
Query: 189 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEMDSLFEGIDFY 368
+ +VN F +EF++K D N R+L +LR CE KR LS+ T AS +DSL +GIDF+
Sbjct: 259 DVLVNFFAKEFEKKNGIDPRKNARSLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFH 318
Query: 369 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 548
+SI R R++ + + V +++ A M+ I +++L GG++ PK+ L++ F
Sbjct: 319 SSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNTPKLTSLMESIF 378
Query: 549 NGKELNKS 572
+ + +S
Sbjct: 379 PEQTIIRS 386
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 107 bits (257), Expect = 2e-24
Identities = 64/208 (30%), Positives = 114/208 (54%), Gaps = 13/208 (6%)
Frame = +3
Query: 3 LGEPTAAAIAYGLDKK-GTGERNVLIFDLGGGTFDVSIL---TIE-------DGIFEVKS 149
+ + A AI Y L + T +I+D G G+ +++ T+E I +++
Sbjct: 194 IDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITRIRA 253
Query: 150 TA-GDT-HLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 323
A G T L G + + +++ F +K+ DL+ N RAL RL R K LS++++
Sbjct: 254 LASGFTLKLSGNEINRKLIGFMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSE 313
Query: 324 ASIEMDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGG 503
A ++ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L GG
Sbjct: 314 AIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGG 373
Query: 504 STRIPKVQKLLQDFFNGKELNKSINPDE 587
++RIP +Q L D+ + +++K++N DE
Sbjct: 374 ASRIPFIQSTLADYVSSDKISKNVNADE 401
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 229 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALRWILSLR 354
N K+ LP E + + + V G GP H+PH R LR + LR
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 187 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 77
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.4
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 668 KQQQILHLLR-LVTVQDSSLDSCTISYG-LVRVNRFV--ELLSIKEILQELLHLGDTSGA 501
K QQ+L LL LV D+ +DS + L ++ V S+ ELL LGD S
Sbjct: 932 KHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNELLGLGDESLC 991
Query: 500 THQYNIVDLSLIHLGIT 450
+ I D SL+ L T
Sbjct: 992 NLETTIEDTSLVKLETT 1008
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -2
Query: 187 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 41
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 RGFEPYPSWHHGETSPLAP 427
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 39 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 209
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 223 LNSWTKWLTMRLSKSSPPKWVSPAVDF 143
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -1
Query: 704 AVSIPRXXGCYIKQQQILHLLRLVTVQDSSLDSCTISYGLVRVNRF--VELLSIKEILQE 531
AV +P G + ++ L + + + + C VN+F +E + +KE LQE
Sbjct: 320 AVPVPFLNGDEPRDYELPPLASFEDIDNLTKEQCIQYLHGYGVNKFSPLETVKLKERLQE 379
Query: 530 LLHLGDTSGATHQYN 486
+ L +H+Y+
Sbjct: 380 AIGLWSKGHESHKYH 394
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 342 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 500
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,815
Number of Sequences: 5004
Number of extensions: 69842
Number of successful extensions: 283
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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