Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F01
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 30 0.45
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 29 0.79
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 29 1.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 2.9
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 27 3.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.2
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 7.3
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 9.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 9.7
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 9.7
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 9.7
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 538 LKFKKALTLSTPASRLTRNAPPXKPSQTPKLPDNKKRKPLSITKVNTTSNN 690
L FKKA+ L + P P P+LP+ K KP T ++ + N
Sbjct: 217 LSFKKAVESIDSKQDLDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAEN 267
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 565 STPASRLTRNAPPXKPSQTPKLPDNKKRKPLSITKVN 675
STP +R T PP Q P P+ K+ S K N
Sbjct: 24 STPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQN 60
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 217 LSIFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 86
L++ +GL+V+ + W + +HL++ L R P+ + R S
Sbjct: 14 LALPFRIGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect(2) = 2.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 244 RSEVIDWFCLSIFL 203
R +++ WFC+S+FL
Sbjct: 2194 RRKLVVWFCISVFL 2207
Score = 20.6 bits (41), Expect(2) = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 193 LIVVEVLFKWELVFHLLFWLQR 128
LIV + W L+ +L W+ R
Sbjct: 2237 LIVAFYIVLWALLLGVLAWISR 2258
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 128 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 214
S+ +VE++ PLE N++ QQQ+ R
Sbjct: 25 SIPAVHRVENKHPLESRLKNWEAQQQQIR 53
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 601 PXKPSQTPKLPDN----KKRKPLSITKVNTTSNN 690
P PS+ PKL D K PLSITKV + +
Sbjct: 607 PHNPSELPKLLDGLRKTNKSYPLSITKVEESGEH 640
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 408 LVQQGILYIHSPXMVKXXXXXXXXXXXVSEFPVTTSL 518
L+QQ +LY+H P V+ S F + TS+
Sbjct: 495 LIQQALLYLHRPWFVRAATRKEEREHYKSSFNLCTSV 531
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 116 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 253
Q++ + +QQ + Q +Q Q QQQ+ ++ P + F P Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +2
Query: 398 QHCSGPT--GXPIHTQPLXGQVITVEYTADEFGFRVS 502
+H S P G PIH QP+ T + G R S
Sbjct: 512 EHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNGLRAS 548
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 562 LSTPASRLTRNAPPXKPSQTPKLPDNKKRKPLSITKV 672
LS+ T NAP KPS+ L +++ KPL TK+
Sbjct: 343 LSSHVQSETENAPVSKPSKPNTLTEDE--KPLQSTKL 377
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 221 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQ 364
KP+ D +PK + +T T + I R+ Q + K + + QE+
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQER 152
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +3
Query: 135 SQNSKWKTNSHLNKTST-TISPSNRNIDKQNQSMTSDLKSN---WRPVPTSPLSVSIRNK 302
S NS + T N + SP N N D Q + T+D N + +P V N+
Sbjct: 317 SSNSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGSAITIAPTPVPRHNR 376
Query: 303 EP 308
P
Sbjct: 377 RP 378
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 231 MTSDLKSNWRPVPTS 275
M+S LKS W PVP++
Sbjct: 1 MSSQLKSTWAPVPST 15
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 240 DLKSNWRPVPTSPLSVSIRNKEPTEATKLHMK 335
DLK +W+ VP+S + + P + KL +K
Sbjct: 430 DLKEHWKEVPSSFTDILTQKTIPCKDHKLKIK 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,985
Number of Sequences: 5004
Number of extensions: 55723
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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