Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_F01
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK094798-1|BAC04427.1| 346|Homo sapiens protein ( Homo sapiens ... 31 6.5
BC071576-1|AAH71576.1| 1237|Homo sapiens ALS2 protein protein. 30 8.7
BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein. 30 8.7
BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein. 30 8.7
BC029174-1|AAH29174.1| 812|Homo sapiens ALS2 protein protein. 30 8.7
AK023024-1|BAB14362.1| 396|Homo sapiens protein ( Homo sapiens ... 30 8.7
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 30 8.7
AF391100-1|AAL14103.1| 1657|Homo sapiens alsin protein. 30 8.7
AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein. 30 8.7
AC007279-1|AAY15058.1| 1598|Homo sapiens unknown protein. 30 8.7
AB053306-1|BAB69015.1| 396|Homo sapiens ALS2 protein. 30 8.7
AB053305-1|BAB69014.1| 1657|Homo sapiens ALS2 protein. 30 8.7
AB046783-1|BAB13389.2| 1658|Homo sapiens KIAA1563 protein protein. 30 8.7
AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein. 30 8.7
>AK094798-1|BAC04427.1| 346|Homo sapiens protein ( Homo sapiens
cDNA FLJ37479 fis, clone BRAWH2013748, moderately
similar to Actin binding LIM protein 1. ).
Length = 346
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 73 DRNHRSYCRCGGSSPKEGFVEARTASGRPTPT*TKLQQLSAPATGI 210
D++ RSY +C SSP + GR TPT Q S P TG+
Sbjct: 119 DQDDRSYKQCRTSSPSS---TGSVSLGRYTPTSRSPQHYSRPDTGV 161
>BC071576-1|AAH71576.1| 1237|Homo sapiens ALS2 protein protein.
Length = 1237
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>BC050330-1|AAH50330.1| 1459|Homo sapiens ALMS1 protein protein.
Length = 1459
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 217
PQR + PEQ + + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214
>BC035025-1|AAH35025.1| 1459|Homo sapiens ALMS1 protein protein.
Length = 1459
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 217
PQR + PEQ + + L + +N Y+ +Q++ RQ
Sbjct: 1180 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1214
>BC029174-1|AAH29174.1| 812|Homo sapiens ALS2 protein protein.
Length = 812
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>AK023024-1|BAB14362.1| 396|Homo sapiens protein ( Homo sapiens
cDNA FLJ12962 fis, clone NT2RP2005694, weakly similar to
X-LINKED RETINITIS PIGMENTOSA GTPASE REGULATOR. ).
Length = 396
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 217
PQR + PEQ + + L + +N Y+ +Q++ RQ
Sbjct: 3581 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 3615
>AF391100-1|AAL14103.1| 1657|Homo sapiens alsin protein.
Length = 1657
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>AC096546-1|AAX82023.1| 1291|Homo sapiens unknown protein.
Length = 1291
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 217
PQR + PEQ + + L + +N Y+ +Q++ RQ
Sbjct: 1022 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1056
>AC007279-1|AAY15058.1| 1598|Homo sapiens unknown protein.
Length = 1598
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 211 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 269
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 270 EISSARNIPSYPDTQ 284
>AB053306-1|BAB69015.1| 396|Homo sapiens ALS2 protein.
Length = 396
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>AB053305-1|BAB69014.1| 1657|Homo sapiens ALS2 protein.
Length = 1657
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 270 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 328
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 329 EISSARNIPSYPDTQ 343
>AB046783-1|BAB13389.2| 1658|Homo sapiens KIAA1563 protein protein.
Length = 1658
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 171 NKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATKLHMKLVTTF 350
N ST +SPS +D+Q + + L +N + V T +VS + ++A ++ T
Sbjct: 271 NHASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITS-SDAMSSQQNVMGTT 329
Query: 351 RLKSRXYLKTVGDNQ 395
+ S + + D Q
Sbjct: 330 EISSARNIPSYPDTQ 344
>AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.
Length = 2055
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 217
PQR + PEQ + + L + +N Y+ +Q++ RQ
Sbjct: 1514 PQRDQKVTPEQTTQHTVSLNELWNKYRERQRQQRQ 1548
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,467,598
Number of Sequences: 237096
Number of extensions: 2191618
Number of successful extensions: 8136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7647
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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