Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_F01
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    52   5e-09
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             35   8e-04
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.83 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 52.4 bits (120), Expect = 5e-09
 Identities = 30/78 (38%), Positives = 40/78 (51%)
 Frame = +2

Query: 296 EQGTDGSYKTSYETGNNIQAQEQGLFEDSR**PRQHCSGPTGXPIHTQPLXGQVITVEYT 475
           E   DG+Y  ++ET N I  QE G  +       +      G   +T P  GQ +++ Y 
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVSQGSDSYTAP-DGQQVSITYV 90

Query: 476 ADEFGFRVSGDHIPTPPP 529
           ADE GF+V G HIPT PP
Sbjct: 91  ADENGFQVQGSHIPTAPP 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 113 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPV--DDFRPKVQLETS 265
           PQ +   +P+QQ + Q    Q     Q QQQ+ +Q  P+  DDF P ++ E S
Sbjct: 822 PQAQAQAQPQQQQQQQQQQPQQ-QQQQQQQQQQQQRGPMTNDDFNPNIEEEAS 873



 Score = 28.7 bits (61), Expect = 0.068
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 116  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQE---YRQAKPVDDFRPKVQLETSTYIPIIR 286
            Q+    +P+QQ + Q   +    + QPQQQ+    +Q +     +P+ Q +    +  + 
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 287  FDKEQGTDGSYKTSYETGNNIQAQEQ 364
               ++G +     S E  N+ Q Q+Q
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQQQ 1583



 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 116  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAK 223
            QR  ++  +QQ + Q   +Q     Q QQQ+  QA+
Sbjct: 1202 QRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 19 RATRLPHVKPHIRNHEAADRNHRSYC 96
          R TR  H+K H+R H      H S+C
Sbjct: 18 RFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 116 QRKVSLKPEQQVEDQLPLEQN-FNNYQPQQQEYRQ 217
           +++  ++ +QQ + Q    Q+  N  QPQQQ+ +Q
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 134 KPEQQVEDQLPLEQNFNNYQPQQQEY 211
           +P+QQ + Q   +Q     Q QQQ +
Sbjct: 439 QPQQQQQQQQQQQQQQQQQQQQQQHW 464


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 482 EFGFRVSGDHIPTPP 526
           E+G RV  D I TPP
Sbjct: 424 EYGIRVERDPILTPP 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,076
Number of Sequences: 438
Number of extensions: 4416
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)