Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_E22
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 186 2e-47
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 186 2e-47
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 186 2e-47
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 186 2e-47
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 169 2e-42
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 169 2e-42
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 67 2e-11
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 67 2e-11
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.20
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.47
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.47
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.81
Z83122-1|CAB05597.1| 293|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81509-1|CAB04154.1| 332|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 5.7
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.7
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 5.7
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 29 5.7
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 5.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 5.7
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 28 7.6
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 7.6
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 28 7.6
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 7.6
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 7.6
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 186 bits (452), Expect = 2e-47
Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 285
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 286 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 462
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 463 LFVGIFLFL 489
LFVG+ L L
Sbjct: 133 LFVGMILIL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIF+EVLGLYG+IVA+ L
Sbjct: 138 ILILIFSEVLGLYGMIVALIL 158
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 118 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 297
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 298 VLI 306
+++
Sbjct: 156 LIL 158
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +3
Query: 462 VIRRNILILIFAEVLGLYGLIVAIYL 539
+I ++++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 186 bits (452), Expect = 2e-47
Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 285
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 286 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 462
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 463 LFVGIFLFL 489
LFVG+ L L
Sbjct: 133 LFVGMILIL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIF+EVLGLYG+IVA+ L
Sbjct: 138 ILILIFSEVLGLYGMIVALIL 158
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 118 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 297
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 298 VLI 306
+++
Sbjct: 156 LIL 158
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +3
Query: 462 VIRRNILILIFAEVLGLYGLIVAIYL 539
+I ++++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 186 bits (452), Expect = 2e-47
Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 285
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 286 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 462
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 463 LFVGIFLFL 489
LFVG+ L L
Sbjct: 133 LFVGMILIL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIF+EVLGLYG+IVA+ L
Sbjct: 138 ILILIFSEVLGLYGMIVALIL 158
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 118 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 297
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 298 VLI 306
+++
Sbjct: 156 LIL 158
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +3
Query: 462 VIRRNILILIFAEVLGLYGLIVAIYL 539
+I ++++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 186 bits (452), Expect = 2e-47
Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 285
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 286 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 462
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 463 LFVGIFLFL 489
LFVG+ L L
Sbjct: 133 LFVGMILIL 141
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIF+EVLGLYG+IVA+ L
Sbjct: 138 ILILIFSEVLGLYGMIVALIL 158
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 118 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 297
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 298 VLI 306
+++
Sbjct: 156 LIL 158
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +3
Query: 462 VIRRNILILIFAEVLGLYGLIVAIYL 539
+I ++++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 169 bits (411), Expect = 2e-42
Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = +1
Query: 103 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 282
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 283 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 459
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 460 RLFVGIFLFL 489
R+FVG+ L L
Sbjct: 140 RMFVGMILIL 149
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIFAEVLGLYG+IVA+ L
Sbjct: 146 ILILIFAEVLGLYGMIVALIL 166
Score = 34.7 bits (76), Expect = 0.087
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 315
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 169 bits (411), Expect = 2e-42
Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = +1
Query: 103 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 282
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 283 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 459
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 460 RLFVGIFLFL 489
R+FVG+ L L
Sbjct: 140 RMFVGMILIL 149
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3
Query: 477 ILILIFAEVLGLYGLIVAIYL 539
ILILIFAEVLGLYG+IVA+ L
Sbjct: 146 ILILIFAEVLGLYGMIVALIL 166
Score = 34.7 bits (76), Expect = 0.087
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 315
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 66.9 bits (156), Expect = 2e-11
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Frame = +1
Query: 127 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 306
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 307 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 444
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 445 TAQQPRLFVGIFL 483
A P LFV I +
Sbjct: 174 DAANPALFVKILI 186
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 66.9 bits (156), Expect = 2e-11
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Frame = +1
Query: 127 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 306
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 307 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 444
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 445 TAQQPRLFVGIFL 483
A P LFV I +
Sbjct: 174 DAANPALFVKILI 186
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 240 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 323
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 339 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 241
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 339 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 241
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +2
Query: 17 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 175
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 176 ELPSQE 193
++P +E
Sbjct: 343 KMPDRE 348
>Z83122-1|CAB05597.1| 293|Caenorhabditis elegans Hypothetical
protein R11A5.2 protein.
Length = 293
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2
Query: 683 RCSETLCKVDPXPGDDHPCARLQTQIVSIEARSTGDGSGVCSGRL---FCVQVDGDDKSV 513
R ET+ K+D DD+ + ++Q VS TG G+G C R+ +V+ D +
Sbjct: 217 RMEETIAKIDEVRIDDNKNIQEKSQRVS-----TGTGAGACINRIVKDLMTKVERLDSIL 271
Query: 512 KTQYFSENKNKN 477
T S N + N
Sbjct: 272 STIRVSNNSSNN 283
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2
Query: 440 RTPASPTMPMAKPAARPENPTAKPAPK 360
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2
Query: 440 RTPASPTMPMAKPAARPENPTAKPAPK 360
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>Z81509-1|CAB04154.1| 332|Caenorhabditis elegans Hypothetical
protein F21A3.1 protein.
Length = 332
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 636 VVAGXRVHLA*GFGAPSTLVYYICXLLV 719
V+AG + + GFG P ++YYIC + +
Sbjct: 80 VLAGYSLGILNGFGVPLRVMYYICVVQI 107
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 270 YCHLRSGRGCPDCWCPPGASQ 332
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 446 VPRTPASPTMPMAKPAARPENPTAKPAPK 360
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 252 CRHGGYYCHLRSGRGCPDCWCPPGASQ 332
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 463 LFVGIFLFLFSLKYWVFTDLSSPSTCTQNKRPEHTPLPSPVLRAS 597
+F+GIFL +++ +W TDL S ++ +P P P R S
Sbjct: 259 IFIGIFLAVYTCTFW--TDLFSNNSTESETQPLLLPRPPRTPRNS 301
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 463 LFVGIFLFLFSLKYWVFTDLSSPSTCTQNKRPEHTPLPSPVLRAS 597
+F+GIFL +++ +W TDL S ++ +P P P R S
Sbjct: 260 IFIGIFLAVYTCTFW--TDLFSNNSTESETQPLLLPRPPRTPRNS 302
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 270 YCHLRSGRGCPDCWCPPGASQ 332
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 270 YCHLRSGRGCPDCWCPPGASQ 332
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 399 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 223
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 222 PH 217
H
Sbjct: 82 DH 83
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 530 GDDKSVKTQYFSENKNKNIPTNNLGC*AVP-RTPASPTMPMAKPAARPENPTAKPAPKWM 354
GDD+ + T FSE+ N N+ +P + P + K + +P+A P
Sbjct: 840 GDDEKIMTTRFSESMPVNYKCRNVEVPRIPNKLPQNMERMARKTRKKRSSPSASDPPVPT 899
Query: 353 NPL 345
+PL
Sbjct: 900 SPL 902
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 443 PRTPASPTMPMAKPAARPENPTAKPAPK 360
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 554 RLFCVQVDGDDKSVKTQYFSENKNKNIPT 468
R+ C+Q++ D++ QY EN N PT
Sbjct: 776 RILCIQMEYCDRATLRQYIDENHCFNAPT 804
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 443 PRTPASPTMPMAKPAARPENPTAKPAPK 360
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 220 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 345
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,487,954
Number of Sequences: 27780
Number of extensions: 474047
Number of successful extensions: 1786
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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