Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E16
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   100   6e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    59   1e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    54   2e-08
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    47   4e-06
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   6.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 99.5 bits (237), Expect = 6e-22
 Identities = 58/151 (38%), Positives = 72/151 (47%)
 Frame = +1

Query: 94  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGCLPWGL*LAVGAHQCILQXKXXXXXX 273
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G +  G   A      +   +      
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG-IYHGTSEAQHERLNVYFNEAAGGKY 59

Query: 274 XXXXXXXXXXXGTMDSVRSGPFGQIFRPDNFVFGKXGAXXNWGXGTLXGXC*XXSIXF*T 453
                      GTMD+V+SG FG +FRPDN ++G+ GA   W  G               
Sbjct: 60  VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL-D 118

Query: 454 XFXKEPESCXXPPGIXXXTXPSGGGPGSXXG 546
              +E E+C    G    T   GGG GS  G
Sbjct: 119 VVRREAEACDALQGF-QLTHSLGGGTGSGMG 148



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 252 EASGGKYVPRAILVDLEPG 308
           EA+GGKYVPRA+LVDLEPG
Sbjct: 53  EAAGGKYVPRAVLVDLEPG 71



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 200 YHGDSDLQLERINVYY 247
           YHG S+ Q ER+NVY+
Sbjct: 36  YHGTSEAQHERLNVYF 51


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
 Frame = +1

Query: 97  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGCLPWGL*LAVGAHQCILQXKXXXXXXX 276
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G L       V   + +   +       
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVD-RKDVFFYQSDDTRYI 61

Query: 277 XXXXXXXXXXGTMDSVRSGPFGQIFRPDNFVFGK--XGAXXNWGXG 408
                       ++++ S  +G ++ P+N +  K   GA  NW  G
Sbjct: 62  PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG 107



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +3

Query: 267 KYVPRAILVDLEP 305
           +Y+PRAIL+DLEP
Sbjct: 59  RYIPRAILIDLEP 71


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = +1

Query: 94  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGCL-PWGL*LAVGAHQCILQXKXXXXX 270
           MREI+ I  GQ G QIG   WE+   EHGI P G + P                +     
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 271 XXXXXXXXXXXXGTMDSVRSGPFGQIFRPDNFVFGKXGAXXNWGXG 408
                         +D VR+GP+  +F P+  + GK  A  N+  G
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARG 106



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 252 EASGGKYVPRAILVDLEP 305
           E   GKYVPR+I VDLEP
Sbjct: 55  ETGQGKYVPRSIYVDLEP 72


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
 Frame = +1

Query: 94  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGCLPWGL*LAVGAHQCILQ-------X 252
           MRE++ +  GQ G QIG   WE+   EHGI P G         V  +   L         
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTEN--SEVHKNNSYLNDGFGTFFS 58

Query: 253 KXXXXXXXXXXXXXXXXXGTMDSVRSGPFGQIFRPDNFVFGKXGAXXNWGXG 408
           +                   +D VR+GP+  +F P+  V GK  A  N+  G
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARG 110



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 252 EASGGKYVPRAILVDLEP 305
           E   GK+VPR+I VDLEP
Sbjct: 59  ETGQGKFVPRSIYVDLEP 76


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 331 GPFGQIFRPDNFVFGKXG-AXXNW 399
           GP+G +F P  F+F   G    NW
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNW 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,792
Number of Sequences: 5004
Number of extensions: 32564
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)