Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E15
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     38   0.002
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    29   0.85 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   4.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.5  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    27   4.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +2

Query: 713 SGHISIAVARTFGARSVVGIDIDSVLIGRARKN 811
           +G +S  +A  FGA  V+G+DID VLI +ARK+
Sbjct: 46  NGTVSAQIASIFGASFVLGLDIDHVLIQKARKH 78


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 455 CVHDHKLALLRQNVRYHLIAQNSKVILRESSSYQ 556
           C +DHK  ++R  + YHL   N++ + R    Y+
Sbjct: 57  CPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYK 90


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 426 SSSSTTRGLDACTTTSSPCSARTSGITSSHKT 521
           SSSS++      +++SS  S+R+S  T+SH+T
Sbjct: 150 SSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 426 SSSSTTRGLDACTTTSSPCSARTSGITSS 512
           SSSS++    + TTT+SP S+ +S  +SS
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSSSSSS 166


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 435 STTRGLDACTTTSSPCSARTSGITSSHKTQ 524
           S+  G     +T+SP   RTS ++S++ TQ
Sbjct: 205 SSKHGFSNALSTASPIPVRTSSVSSTYLTQ 234


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 679 EISAYASQRLGDECPSLHSDYGNHNTYHSFHIGILNF*DEKLVAAALPQNY 527
           + SA +S+ +  + P++   +         +  +LNF ++KL    L QNY
Sbjct: 116 QTSAQSSKLIEAQLPTVEDRFAKQTNEVDINTHLLNFVEKKLKQERLAQNY 166


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 426 SSSSTTRGLDACTTTSSPCSARTSGITSSHKTQK*F*GRAAATNFSS 566
           SSS T+      +++SSP S+  S  TSS K+   F    ++++ +S
Sbjct: 333 SSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,613
Number of Sequences: 5004
Number of extensions: 64814
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)