Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E09
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   103   3e-23
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    54   3e-08

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  103 bits (247), Expect = 3e-23
 Identities = 46/100 (46%), Positives = 70/100 (70%)
 Frame = +1

Query: 133 IKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSADPF 312
           ++ ++++ P+   LPEIA P R + F+ K+ WT  T  I+ V  Q+PL GI+SSDS+DP 
Sbjct: 4   LRFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPL 63

Query: 313 YXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXEL 432
             + +ILA+NRGTL+ELGISPIV S +++ L  G++  E+
Sbjct: 64  LWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEV 103



 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 35/52 (67%), Positives = 37/52 (71%)
 Frame = +2

Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
           GAG CLL+ + L  A LIV LL E LQKGYG G GISLFIAT  CE I WKA
Sbjct: 146 GAGICLLLILQLAAASLIVLLLDELLQKGYGLGSGISLFIATINCENIFWKA 197


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 26/97 (26%), Positives = 46/97 (47%)
 Frame = +1

Query: 130 GIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSADP 309
           G + +  I P   +LPE+  P   ++   K+ W A    +Y +   IP+ G   +D+ DP
Sbjct: 3   GARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDP 62

Query: 310 FYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAK 420
                V+  S+   L+  G++PI  S  ++ + A  K
Sbjct: 63  INNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKK 99



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 572 LLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKAL 715
           +++ + + + G++   L E ++KG+G G G  L + ++I   I+W  L
Sbjct: 151 IMLILQIFLPGIVCIYLCEIIEKGHGLGSGPVLLLGSHILGNIMWDVL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,257
Number of Sequences: 5004
Number of extensions: 34141
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)