Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_E09
(856 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 182 1e-45
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 182 1e-45
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 179 1e-44
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 177 3e-44
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 177 3e-44
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 86 1e-16
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 182 bits (443), Expect = 1e-45
Identities = 90/130 (69%), Positives = 99/130 (76%)
Frame = +1
Query: 127 MGIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSAD 306
MGIK +EVI P+C +LPEI P R IQFR KV WTA T I+ VCCQIPL GIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 307 PFYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXELGDTPXDXXXXNGAXK*XG 486
PFY + VILASNRGTL+ELGISPIV SGLIM L AGAK E+GDTP D NGA K G
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 487 MVIPVGXAIV 516
M+I +G AIV
Sbjct: 121 MIITIGQAIV 130
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 144 GAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 182 bits (443), Expect = 1e-45
Identities = 90/130 (69%), Positives = 99/130 (76%)
Frame = +1
Query: 127 MGIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSAD 306
MGIK +EVI P+C +LPEI P R IQFR KV WTA T I+ VCCQIPL GIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 307 PFYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXELGDTPXDXXXXNGAXK*XG 486
PFY + VILASNRGTL+ELGISPIV SGLIM L AGAK E+GDTP D NGA K G
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 487 MVIPVGXAIV 516
M+I +G AIV
Sbjct: 121 MIITIGQAIV 130
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 144 GAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 179 bits (436), Expect = 1e-44
Identities = 89/130 (68%), Positives = 98/130 (75%)
Frame = +1
Query: 127 MGIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSAD 306
MGIK +EVI P+C + PEI P R IQFR KV WTA T I+ VCCQIPL GIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVPPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 307 PFYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXELGDTPXDXXXXNGAXK*XG 486
PFY + VILASNRGTL+ELGISPIV SGLIM L AGAK E+GDTP D NGA K G
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 487 MVIPVGXAIV 516
M+I +G AIV
Sbjct: 121 MIITIGQAIV 130
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 144 GAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 177 bits (432), Expect = 3e-44
Identities = 88/130 (67%), Positives = 98/130 (75%)
Frame = +1
Query: 127 MGIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSAD 306
M IK +EVI P+C ILPEI P R IQF+ KV WTA T I+ VCCQIPL GIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 307 PFYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXELGDTPXDXXXXNGAXK*XG 486
PFY + VILASNRGTL+ELGISPIV SGLIM L AGAK E+GDTP D NGA K G
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 487 MVIPVGXAIV 516
M+I +G +IV
Sbjct: 121 MIITIGQSIV 130
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 144 GAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 177 bits (432), Expect = 3e-44
Identities = 88/130 (67%), Positives = 98/130 (75%)
Frame = +1
Query: 127 MGIKXVEVIXPYCXILPEIAXPXRXIQFRXKVXWTAXT*XIY*VCCQIPLSGIMSSDSAD 306
M IK +EVI P+C ILPEI P R IQF+ KV WTA T I+ VCCQIPL GIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 307 PFYXIXVILASNRGTLLELGISPIVXSGLIMHLXAGAKXXELGDTPXDXXXXNGAXK*XG 486
PFY + VILASNRGTL+ELGISPIV SGLIM L AGAK E+GDTP D NGA K G
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 487 MVIPVGXAIV 516
M+I +G +IV
Sbjct: 121 MIITIGQSIV 130
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 144 GAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +2
Query: 557 GAGXCLLIXIXLXVAGLIVXLLXEWLQKGYG*GXGISLFIATNICETIVWKA 712
GAG CLLI I L VAGLIV LL E LQKGYG G GISLFIATNICETIVWKA
Sbjct: 24 GAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,829,181
Number of Sequences: 237096
Number of extensions: 1351417
Number of successful extensions: 5451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5451
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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