Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E07
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    27   3.3  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   4.3  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.7  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   10.0 

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 35  RTPCSVTTLYTNLTRQSPDTRIKQYAASYLCTSLSRCCSQLPSDP 169
           R P  +TTLY   +  SPDT    Y AS L  +L   C ++ + P
Sbjct: 138 RDPIGITTLYQGFSSDSPDT---AYFASEL-KALHPVCDKIIAFP 178


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   ASSVPCLRERTPCSVTTLYTNLTRQSPDTRIK 103
           +S+VP L++   C  +  +TN  +  P+ + K
Sbjct: 3   SSNVPVLKDEDKCKFSMRFTNFLKSRPELKTK 34


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +2

Query: 8   ASSVPCLRERTPCS--VTTLYTNLTRQSPDTRIKQYAASYLCTSLSRCCSQLPSDPAXAQ 181
           A++ P     T CS  V  L  +       ++I Q   S LC   ++ CS + SDP    
Sbjct: 362 ANAFPVTPNTTICSNAVKNLKCSANGTPSGSKISQ-VLSELCYYDNKACSSISSDPYEGT 420

Query: 182 RITTIQLDGVQYXISRMNPYSPE 250
                   GVQ     +N Y+ +
Sbjct: 421 YGNYTGCTGVQQLSIALNAYTQD 443


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 454 TRXKWQTGAHPQKXVCVRGYY--PMSRSHICCNLHLLDKSLSN 332
           +R K QT  H +  +    Y   P+S+S    + HLLD+S+SN
Sbjct: 82  SRLKSQTVIHNKSQILYFLYLLSPISQSSRDVSSHLLDESISN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,622
Number of Sequences: 5004
Number of extensions: 52008
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)