Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_E06
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical ... 34 0.16
AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical ... 33 0.21
AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical... 33 0.36
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 32 0.63
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 32 0.63
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 31 1.5
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 31 1.5
AF106574-3|AAC78159.2| 427|Caenorhabditis elegans Hypothetical ... 30 1.9
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 30 1.9
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF099913-3|AAC68750.1| 143|Caenorhabditis elegans Hypothetical ... 29 3.4
AF099913-2|AAC68749.1| 254|Caenorhabditis elegans Hypothetical ... 29 3.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 4.5
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 5.9
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 29 5.9
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 29 5.9
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 29 5.9
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 29 5.9
>AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical
protein Y45F10D.9 protein.
Length = 492
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 101 IEDIVSEFDRVSERIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKTF 280
+ + EF+ +SE+ EL ++E+ + + + ED+ED V L + L ++ +
Sbjct: 214 LSGVKEEFEEMSEKFKELEDEVELVKEERENIRLLVEDKEDEVADLKQDTESLQKQLEEN 273
Query: 281 TEE 289
EE
Sbjct: 274 QEE 276
>AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical
protein T23C6.3 protein.
Length = 533
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 440 DVEDVQAWIRKAELTARDRTLPPEPYRERLVATRSEVPNIADRVERLTRNARAIVEGSRD 619
D++ + +++ +++A DRT P ++R R+E + R + ++N+R + +RD
Sbjct: 29 DIKKLTNKVKEIDISAFDRTRLFNPRKQRSCHKRAEPVSEEHRKKESSKNSREYTKRNRD 88
Query: 620 ASER-QLVQSTVTALSDQFASVCSELEARQAXVE 718
Q + S +TA+ +F + E+ V+
Sbjct: 89 EIVTCQKLFSEITAIMRRFKQLTEEMSVETVEVK 122
>AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical
protein Y52B11A.10 protein.
Length = 819
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +2
Query: 98 DIEDIVSEFDRVSERIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKT 277
D ED+ D ++ + +EVS+ K + Y G+D ED+ + LT E + +E +T
Sbjct: 85 DEEDMEDSEDEEEKKPTNRKGIVEVSVNKGKRKY--GDDSEDSDEDLTYE--QYMEEVQT 140
Query: 278 FTEESRKRYGGSAPAD 325
T++ R+ G+ D
Sbjct: 141 ATKKRRQEADGTEEDD 156
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 98 DIEDIVSEFDRVSERIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKT 277
D+E +E R+ ERI ++ Q +V K+R V +EE LTA EL T
Sbjct: 735 DVEGTANELVRIDERISDITAQADVIQDKIRETEVGSSEEE----MLTASYLELTNERNT 790
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 98 DIEDIVSEFDRVSERIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKT 277
D+E +E R+ ERI ++ Q +V K+R V +EE LTA EL T
Sbjct: 735 DVEGTANELVRIDERISDITAQADVIQDKIRETEVGSSEEE----MLTASYLELTNERNT 790
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 566 DRQCLAPRTWWPP---GVLCTAPVAECDLALSVPPY 468
D L+ +TW P G +C + CDL LSV PY
Sbjct: 584 DFSALSTKTWTQPRKSGAVCGQDPSYCDLPLSVAPY 619
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 566 DRQCLAPRTWWPP---GVLCTAPVAECDLALSVPPY 468
D L+ +TW P G +C + CDL LSV PY
Sbjct: 329 DFSALSTKTWTQPRKSGAVCGQDPSYCDLPLSVAPY 364
>AF106574-3|AAC78159.2| 427|Caenorhabditis elegans Hypothetical
protein E02D9.1a protein.
Length = 427
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -3
Query: 694 ELAAHRRELVRESRDCGLD*LSLACITASFHDGASVACQTLDAIGNVWHLGPG 536
E+++ ++ELV E D G D + S H SVA + AI +VW+ GPG
Sbjct: 226 EVSSIKKELVLEYMDKG-DFRPFGILPFSVHQ--SVALSLIRAIRHVWNSGPG 275
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 104 EDIVSEFDRVSE---RIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVERTK 274
ED+ + RV E ++ EL QQIEVS + + ++ + + + A++SE+
Sbjct: 801 EDLRTSDARVQELNIQVSELEQQIEVSSREFSVITEANKEMQLKLDSSEAQISEMTASLT 860
Query: 275 TFTEE 289
F EE
Sbjct: 861 AFQEE 865
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 113 VSEFDRVSERIDELRQQIEVSIAKVRTLYVFGEDEEDNVKTLTAEVSELVE--RTKTFTE 286
V FD++ + +++ R + K+R + E E ++ +L AE E +E +TK F+
Sbjct: 354 VEGFDKLKQELEKERDDALADVQKIREVKRNVERELQSLTSLMAERDEQIEELKTKMFSF 413
Query: 287 ESRKRYGGSA 316
E K+ SA
Sbjct: 414 EMIKKDHESA 423
>AF099913-3|AAC68750.1| 143|Caenorhabditis elegans Hypothetical
protein C29F9.9 protein.
Length = 143
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 614 GFLPRWRERCVSNARRDRQCLAPR 543
GFLPR + V +A R R+C APR
Sbjct: 20 GFLPRRKPPKVGSALRSRRCAAPR 43
>AF099913-2|AAC68749.1| 254|Caenorhabditis elegans Hypothetical
protein C29F9.8 protein.
Length = 254
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 614 GFLPRWRERCVSNARRDRQCLAPR 543
GFLPR + V +A R R+C APR
Sbjct: 20 GFLPRRKPPKVGSALRSRRCAAPR 43
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 288 SSVKVLVRSTSSETSAVKVFTLSSSSSPNTYKVLTLAMET-SICCRSSSILSDTRSNSET 112
SSV + +STSS T+ T+S SS T++ T S S++ T S +
Sbjct: 855 SSVSTVSQSTSSSTTGQS--TVSESSVSTVSSESTISQSTGSTTTGESTVFGSTGSTATG 912
Query: 111 ISSMSAS 91
S+MSAS
Sbjct: 913 SSTMSAS 919
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 270 VRSTSSETSAVKVFTLSSSSSPNTYKVLTLAMETSICCRSSSILSDTRSNSETISSMSA 94
V ST + TS SSS+SP + + ++ + T++ SS+I + S +I+S SA
Sbjct: 454 VTSTPTITSTQGAMASSSSNSPTSTQAISSSTVTTVA--SSTIAPTSSQESSSIASSSA 510
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 288 SSVKVLVRSTSSETSAVKVFTLSSSSSPNTYKV-LTLAMETSICCRSSSILSDTRSNSET 112
SS S+SS T+A SSSSS ++ T + +T+ SS+ SD+ + S
Sbjct: 47 SSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTTSSN 106
Query: 111 ISSMSAS 91
SS ++S
Sbjct: 107 SSSSTSS 113
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 409 GPNYSHGILG*CRGCAGLDP*GGTDSARSHSATGAVQRTPGGHQVRGAKHCRSRRAFDT 585
G N+ + R G D TD A S + TG+ TP H + S+ + D+
Sbjct: 34 GTNFKVSVRSSSRSTDGTD---STDGANSDNVTGSTGSTPAHHSITNLNMALSQHSIDS 89
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 409 GPNYSHGILG*CRGCAGLDP*GGTDSARSHSATGAVQRTPGGHQVRGAKHCRSRRAFDT 585
G N+ + R G D TD A S + TG+ TP H + S+ + D+
Sbjct: 34 GTNFKVSVRSSSRSTDGTD---STDGANSDNVTGSTGSTPAHHSITNLNMALSQHSIDS 89
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +2
Query: 440 DVEDVQAWIRKAELTA----RDRTL-PPEPYRERLVATRSEVPNIADRVERLTRNARAIV 604
D+ED AWIR+ E A R R L + ++ A +E+ N ++E ++ A ++
Sbjct: 809 DIEDELAWIREKEQVAGSTNRGRDLIGVQNLIKKQQALIAEIANHDSQIESVSSAANDMI 868
Query: 605 EGSRDASERQLVQSTVTALSDQFASVCSELEARQAXVEDACDA 733
+ + ++ + L D + + S+ E R+ ++D+ A
Sbjct: 869 QQGHFLAPE--IRDKLAQLRDNWRILKSKAEKRRTDLDDSLQA 909
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 409 GPNYSHGILG*CRGCAGLDP*GGTDSARSHSATGAVQRTPGGHQVRGAKHCRSRRAFDT 585
G N+ + R G D TD A S + TG+ TP H + S+ + D+
Sbjct: 34 GTNFKVSVRSSSRSTDGTD---STDGANSDNVTGSTGSTPAHHSITNLNMALSQHSIDS 89
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 409 GPNYSHGILG*CRGCAGLDP*GGTDSARSHSATGAVQRTPGGHQVRGAKHCRSRRAFDT 585
G N+ + R G D TD A S + TG+ TP H + S+ + D+
Sbjct: 34 GTNFKVSVRSSSRSTDGTD---STDGANSDNVTGSTGSTPAHHSITNLNMALSQHSIDS 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,862
Number of Sequences: 27780
Number of extensions: 329287
Number of successful extensions: 1115
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -