Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E06
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 101 IEDIVSEFDRVSERIDELRQQI 166
           + ++ + FD++SER ++LR +I
Sbjct: 298 LNELFARFDQLSERFEQLRIKI 319


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -2

Query: 587 CVSNARRDRQCLAPRTWWPPGVL-CTAPVA 501
           CV        C    TWWP  +L CT  +A
Sbjct: 149 CVPFTTYTPVCEYDHTWWPYDILNCTIHIA 178


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 306 GDPLRQT-LPKNCPLWN*RLKLSPQRWK 386
           GD + +  +P    +WN ++ ++  RWK
Sbjct: 44  GDYIEENNMPNGMQIWNDKVFITIPRWK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,667
Number of Sequences: 438
Number of extensions: 4637
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)