Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_E02
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.48 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   1.1  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   2.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.6  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.4  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -2

Query: 559 PRVEAAHXPRQAPRRSATADSASRQPPSVRGPNLSK*ARKLQRPSSTRPRYRNPVALIST 380
           P V +   P  +    +TA +++    S   P+ +         SS+ PR  +P+A  + 
Sbjct: 380 PSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAE 439

Query: 379 RTPPITRWAP 350
             PP+ + +P
Sbjct: 440 NKPPVAQQSP 449


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -2

Query: 445 RKLQRPSSTRPRYRNPVALISTRTPPITRWAPLRRRSPGPVKQQGLGFIKRHLQTQPSDP 266
           R  + P+S+ P    PV  I ++  P      +   +P PVKQ G   ++  L       
Sbjct: 422 RHQKLPTSSPPSQHPPVGQIPSQYLPYQAGLKVPGNTPIPVKQVGGMPLQSPLPVSMKPS 481

Query: 265 ADDEGHPRAGKTSRL-AQILPPGHDQSVVRVANYA*TRERSAKGAPQDPIIADVPQERAK 89
           ADD  H RA  T  + A  LP    +   +          +++  PQ P + +  +  A+
Sbjct: 482 ADD--HSRATPTRSVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNYYRPHAQ 539


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 571 DRTTPRVEAAHXPRQAPRRSATADSASRQPPSVRGPNLSK*ARKLQRPSSTRPRYRNPVA 392
           +R   ++  A  P  AP + +   SAS  PP  R  N S  +      +ST P+  +P  
Sbjct: 184 ERQLKQLPDAEQPAAAPVKKSKQKSASTAPPRTR-RNSSVSSTSASVAASTAPKAASPAV 242

Query: 391 L 389
           L
Sbjct: 243 L 243


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -2

Query: 427 SSTRPRYRNPVALISTRTPPITRWAP--LRRRSPGPVKQQGLGFI--KRH-LQTQPSDPA 263
           S+T    R+P A  ++  PPI ++AP    +  P P K++G   +  + H  +T+ +  +
Sbjct: 434 SATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGEPAVQTRNHSKRTRTATSS 493

Query: 262 DDEGHPRA 239
            +E  PRA
Sbjct: 494 VEETTPRA 501


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = -2

Query: 580 SAXDRTTPRVEAAHXPRQAPRRSATADSASRQPPSVRGPNLSK*ARKLQRPSSTRPRYRN 401
           S+ + + P +  A   +Q P   AT    S    S RG  +S   + L RP +     R+
Sbjct: 700 SSSEYSLPFISPASDYQQNPLLHATKSLVSIHQQSQRGEMVSTLKQALSRPHTASTVVRS 759

Query: 400 PVAL-----ISTRTPPITRWAPLRRRSPGPVK 320
           P  +      S R P +      R  SP P++
Sbjct: 760 PSEINLTRQTSNRVPLLDMLNLNRAMSPTPIQ 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,724
Number of Sequences: 5004
Number of extensions: 55051
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)