Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_E01
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.8
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 27 2.4
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.2
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 4.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 4.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 5.6
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S... 26 7.4
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 9.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.8
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 335 KKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKPDETR 499
+KK NS++N S++ + S ++N ++ SS SKHL + N + PD T+
Sbjct: 272 QKKSNSIDNLTPSSELFRKRSRDNNLSRE----SSVSSKHLDYNSRNYNKRDRDPDRTK 326
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 98 LRDCIVKFKSDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTLDSK 247
LR I+K+K + SYL L G + LQP L P S + K
Sbjct: 19 LRSQIIKYKYSNVSYLNKSALRCGQATDSTHPHILQPGELTPRISAQEYK 68
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 242 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 421
SKK + SQ S+ S P + K+N V + +S + P +K+D P+
Sbjct: 349 SKKKHTGPSLSSASQPSAASSSSSS--EPSNLDKINDVKKNIEVSANEPQPRPVKEDVPK 406
Query: 422 S 424
S
Sbjct: 407 S 407
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 233 TLDSKKSPLALLAQTCSQIGVD-STPSKPLLPPHDKKKVNSVNNSDI--ISRSSPNSNTM 403
T D+ ++ + Q VD +TPS P +P H K K+++ ++ + S S +
Sbjct: 311 TEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPVKPASLQSEEDIQL 370
Query: 404 KQDKPRSSPESKHL 445
+P S S L
Sbjct: 371 SFKQPELSASSAEL 384
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 4.2
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +2
Query: 140 YLQMVVLEDGGMMATNPNQYLQPDYLAPLPS-TLDSKKSPLALLAQTCSQIGVDSTPSKP 316
Y QM L G+ N QP YLAP+PS T+ + L++ + + Q + + ++
Sbjct: 193 YPQMPSLNQPGLHIVN-----QPTYLAPVPSATVPTNSVSLSMPSFSQGQKNIPAAINQE 247
Query: 317 LLPPHDKKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPES 436
+ K+ N ++ I + P+ M D +S+ ES
Sbjct: 248 MSVGTTKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMES 291
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 242 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 421
+ K+ + L+ S + P PL+ + +N S S P+SN +K D
Sbjct: 488 NNKNDESSLSPAKSHAVITQAPKIPLISTFTRLSTRKSSNDFNSSNSRPSSNALKSDANE 547
Query: 422 SSPES 436
++ S
Sbjct: 548 NTDSS 552
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.6
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 164 DGGMMATNPNQYLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKK 343
D + T P+ +A P+ + K P+ Q S+ V TPS +K+K
Sbjct: 541 DQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSP------EKQK 594
Query: 344 VNS----VNNSDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKP 487
V S + N D + +S ++ KP S+P+ L ++V+T P
Sbjct: 595 VLSPPPIITNFDKETLASNEAHEAVPQKP-SAPQVTRLMAPQDSSSVVTPSP 645
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 221 PLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSP 388
P P+ + P + + T + +D+TP P L P + +++ +++S+P
Sbjct: 372 PNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTLAPQHTSSNATKHSAPPVTKSAP 427
>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 125 SDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTL 238
S SKSY+ V+ M + ++ YL PLPSTL
Sbjct: 73 SRSKSYVSEPVIHLNVMEPLYVDHRIRSVYLQPLPSTL 110
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/79 (21%), Positives = 32/79 (40%)
Frame = +2
Query: 251 SPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPRSSP 430
SP + + +G +S + + K ++ NN+ S S + K R +
Sbjct: 235 SPRSSIVNGPRTLGKNSKRADDTARMASRMKPSNFNNNIQSSSYGHASQSTKLTSQRDND 294
Query: 431 ESKHLAFKPYEANVITKKP 487
K L F PY++ + +P
Sbjct: 295 HQKDLNFSPYKSIPLNNRP 313
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 341 KVNSVNNSDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKPDET 496
KV+S NNS N+ + +S E LA +AN+ T+ ET
Sbjct: 1113 KVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSET 1164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,085
Number of Sequences: 5004
Number of extensions: 69487
Number of successful extensions: 240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -