Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_D22
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 36 0.058
12_01_0595 + 4862327-4862644 31 1.7
07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654... 30 2.2
12_01_0724 - 6377023-6379392 30 2.9
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 30 2.9
09_06_0296 - 22104796-22104916,22104967-22105022,22105094-221051... 29 3.8
08_02_0860 + 21970888-21971833,21973400-21974127 29 5.1
08_01_0305 - 2555227-2555635,2555785-2556254 29 6.7
04_04_0981 + 29912275-29912814 29 6.7
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368... 28 8.8
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376... 28 8.8
02_05_0971 - 33188816-33188965,33190406-33190705,33191500-331915... 28 8.8
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 35.5 bits (78), Expect = 0.058
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = +3
Query: 276 RHGQPSPRTSRANTPSSAANSLRREDATDGGEEVRVVELEKGPSGLGFNIVGGEDGHGIY 455
R S +S P S + + E VE+ K P GL F G DG G Y
Sbjct: 55 RASSSSSSSSSQTEPKSEGGEAAAAEGEEQPYEEYEVEILK-PYGLKF--AKGRDG-GTY 110
Query: 456 VSFLLAGGPAERSGALRRGDRLLAVN 533
+ +L G A+++G GD++LA +
Sbjct: 111 IEAILPGAAADQTGKFEVGDKVLATS 136
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 74 DNGIYVTKIMAGGAAHQDGRLRVGDKLL 157
D G Y+ I+ G AA Q G+ VGDK+L
Sbjct: 106 DGGTYIEAILPGAAADQTGKFEVGDKVL 133
>12_01_0595 + 4862327-4862644
Length = 105
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 PRHGQPSP--RTSRANTPSSAANSLRREDATDGGEEV 377
P H PSP + R++ P + + + DATDGG EV
Sbjct: 18 PSHADPSPAAKLQRSSPPDPSPPAEAQGDATDGGGEV 54
>07_03_0670 +
20562188-20562923,20564288-20564826,20564967-20565458,
20566803-20567018
Length = 660
Score = 30.3 bits (65), Expect = 2.2
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +3
Query: 288 PSPRTSRANTPSSAANSLRREDATDGGEEVRVVE-LEKGPSGLGFNIVGGEDGHGIYVSF 464
P+PR A S + SL R A G+E R V+ L P+ + V G+ +
Sbjct: 20 PTPRPDAAAAAPSMSPSLLR--AARSGDERRFVKALLADPAAPDLDAVATAGGNTLLHVA 77
Query: 465 LLAGGPAERSGALRRGDRLLAVNDLDISHATHEQAAKA 578
G PA S LRR LLA + + H AA+A
Sbjct: 78 AWGGHPALASLLLRRAPGLLAARNAALDTPLH-LAARA 114
>12_01_0724 - 6377023-6379392
Length = 789
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +3
Query: 282 GQPSPRTSRANTPSSAANSLRREDATDGGEEVRVVELEKGPSGLGFNIVGGEDGHGIYVS 461
G+ +PR + PS + SL RE+A +G E P+G G GE +Y
Sbjct: 19 GEQNPRRRASTPPSPSRRSLGREEALEGVER----SATSPPAGDGEGRRDGERRLLVYGD 74
Query: 462 FLLAGGPAERSGALRR 509
G + +GAL R
Sbjct: 75 GSTPQGALQAAGALLR 90
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 258 FWYQGPRH-GQPSPRTSRANTPSSAANSLRREDATDGGEEVRVVELE 395
F + GP G P+ + A T ++A++S +D DG EV VVELE
Sbjct: 266 FHHHGPPAVGAPTVFRAGATTTAAASSSGGGDDDGDGDGEVDVVELE 312
>09_06_0296 -
22104796-22104916,22104967-22105022,22105094-22105189,
22106431-22106505,22107339-22107639,22107728-22107798,
22109340-22109468,22109566-22109760,22109916-22110082,
22110175-22110271,22110689-22110697
Length = 438
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 325 AQQILSDAKTQRTAARRYAWWSWRKVPRAWGSTSSVAKTGTASTFL 462
A Q+L D K + A A W+ WG + AKT + FL
Sbjct: 309 AMQVLKDFKNTGSKAVASASTRWKSRRSTWGKPPATAKTPVSDLFL 354
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 363 GGEEVRVVELEKGPSGLGFNIVGGEDGHGIYVSFLLAGGPAERSGALR 506
G E R++++ GP G+ + V +DG G Y + A A A R
Sbjct: 215 GARERRLLQMPLGPGGMPVDAVVAKDGSGNYTTVSAAVDAAPTESASR 262
>08_01_0305 - 2555227-2555635,2555785-2556254
Length = 292
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/70 (37%), Positives = 32/70 (45%)
Frame = +3
Query: 297 RTSRANTPSSAANSLRREDATDGGEEVRVVELEKGPSGLGFNIVGGEDGHGIYVSFLLAG 476
R S A T ++ A R GGE R EL +G GLG E+ GI F+ G
Sbjct: 160 RRSAAATGAAVAGGWR--SPASGGEGDRRGELGRGRGGLGKTGKKEEESTGI--DFIAQG 215
Query: 477 GPAERSGALR 506
G ER+G R
Sbjct: 216 G-EERAGERR 224
>04_04_0981 + 29912275-29912814
Length = 179
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 279 HGQPSPRTSRANTPSSAANSLRREDATDGGEEVRVVELEK--GPSGLGFNIVGGEDGHGI 452
H +P P + +++PSS+++S A G ++E E+ G GG G GI
Sbjct: 37 HARPCPCAASSSSPSSSSSSAASGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRGI 96
Query: 453 YV 458
V
Sbjct: 97 VV 98
>08_01_0415 +
3687998-3688096,3688326-3688520,3689219-3689385,
3689459-3689509,3689576-3689657,3689764-3689832,
3689939-3690109
Length = 277
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 357 TDGGEEVRVVELEKGPSGLGFNIVGGEDGHGIYVSFLLAGGPAERSGALRRGDRLL 524
T G + VE++K P GL +G + G G+ ++ + +GG A R+G L+ GD++L
Sbjct: 68 TAGAAKNIEVEVDK-PLGL---TLGQKTGGGVVITAVDSGGNAARAG-LKSGDQVL 118
>07_03_1145 +
24335746-24336299,24336967-24337105,24337634-24337695,
24338140-24338278,24338692-24338829
Length = 343
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 273 PRHGQPSPRTSRANTPSSAANSLRREDATDGGEEVRVVELEKGPSGLGFNIVG 431
PR P P RA+ S+AA + DA DG + V + + K P+ + G
Sbjct: 21 PRPPPPPPSRIRASPLSTAAAAASDGDAADGVDTVEQLLVTKPPASSSSSSAG 73
>02_05_0971 -
33188816-33188965,33190406-33190705,33191500-33191562,
33191637-33191710,33191880-33191973,33193396-33193482,
33193753-33193887
Length = 300
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 288 PSPRTSRANTPSSAANSLRREDATDGGEEVRVVELEKGPSGLGF 419
P P + A +PS + R A D G+ R E+ G S GF
Sbjct: 205 PPPVATEAESPSCNGINKRGSSAMDSGKPPRASEVGSGQSQSGF 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,543,096
Number of Sequences: 37544
Number of extensions: 421779
Number of successful extensions: 1492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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