Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D18
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.88 
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    29   0.88 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    28   1.5  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    26   6.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   8.2  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +2

Query: 236 YETVNELYKVLIPIAEEHRDYKKLANIHSKLQEAFTRIEQLH----GKRVFGTYFRVC-- 397
           Y + N    V+  +   +  +K++A  + KLQ+ F  +E       G+R+ G YFR    
Sbjct: 262 YVSANPKTPVMYMVDPAYEPHKQIAR-YEKLQQIFQVVEATVSPEVGERLIGLYFRYIHR 320

Query: 398 FYGQLFGDLHLQQFVYKEHALTKL 469
            Y  + G+  L  F   +H L+ +
Sbjct: 321 VYPVIHGERFLLAFKKAKHKLSPI 344


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 488 LENFYSQRFGAENVVIIKDSNNVDPATLDPDKAYIQI--TYVEPYFEP 625
           L NFY   F ++N+VII   N VD  T D D+  IQ+  T+  P  +P
Sbjct: 166 LSNFY-MAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMSKP 211


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/108 (20%), Positives = 47/108 (43%)
 Frame = +2

Query: 386 FRVCFYGQLFGDLHLQQFVYKEHALTKLPEIFSRLENFYSQRFGAENVVIIKDSNNVDPA 565
           F  CFY  +FG+ H +   Y++  L++  E  +++ +   +R       + ++    DP+
Sbjct: 13  FLACFYTTVFGEKHFEAEEYRDSFLSQ--ENMNKINHTTIER-------LFREMTENDPS 63

Query: 566 TLDPDKAYIQITYVEPYFEPHELRRRLTHYERNHNIKRFMYATPFTAE 709
            L   K   +++  E      +L+  L+  + N  +     +  FT E
Sbjct: 64  LLSSSKTLAELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAFTIE 111


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 242 TVNELYKVLIPIAEEHRDYKKLANIHS 322
           T  EL+K+ IP++    DYK +A+ HS
Sbjct: 236 TPAELHKLNIPVSPTVSDYKIMADNHS 262


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 643 PHALRAEPQHQEVHVRH 693
           P++L ++P+HQE H+ H
Sbjct: 124 PNSLSSQPKHQEFHLFH 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,326
Number of Sequences: 5004
Number of extensions: 36318
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)