Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_D17
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 90 2e-18
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 89 4e-18
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 89 4e-18
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 79 4e-15
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 79 4e-15
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 77 1e-14
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 77 1e-14
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 57 1e-08
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 54 1e-07
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 3e-06
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 3e-06
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 5e-06
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 36 0.049
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 36 0.049
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.4
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.2
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 9.7
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 90.2 bits (214), Expect = 2e-18
Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 5/195 (2%)
Frame = +2
Query: 146 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 319
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 320 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 490
D+E+ KV+ +K+S + EHP +NFVG++LGP+G
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 491 TMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVXXXXXXXXXXXXX 670
T KQL+++T CK+ V GRGSMRD++KEE R P + HL+++LHV
Sbjct: 157 TAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKV 214
Query: 671 XXXXXXXXVXKYLVP 715
V K LVP
Sbjct: 215 KLMRAVEEVRKLLVP 229
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 89.0 bits (211), Expect = 4e-18
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 5/174 (2%)
Frame = +2
Query: 209 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 373
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 374 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 553
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 554 RDRQKEEELRQSLDPKYSHLADDLHVXXXXXXXXXXXXXXXXXXXXXVXKYLVP 715
RD++KEE R P + HL+++LHV V K LVP
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 89.0 bits (211), Expect = 4e-18
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 5/174 (2%)
Frame = +2
Query: 209 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 373
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 374 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 553
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 554 RDRQKEEELRQSLDPKYSHLADDLHVXXXXXXXXXXXXXXXXXXXXXVXKYLVP 715
RD++KEE R P + HL+++LHV V K LVP
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 79.0 bits (186), Expect = 4e-15
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Frame = +2
Query: 236 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 406
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 407 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 586
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 587 SLDPKYSHLADDLHVXXXXXXXXXXXXXXXXXXXXXVXKYLVPDTNETVWMSR 745
+ + HL DDLHV V K L+P T + R
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKR 314
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 79.0 bits (186), Expect = 4e-15
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Frame = +2
Query: 236 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 406
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 407 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 586
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 587 SLDPKYSHLADDLHVXXXXXXXXXXXXXXXXXXXXXVXKYLVPDTNETVWMSR 745
+ + HL DDLHV V K L+P T + R
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKR 314
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = +2
Query: 443 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 622
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 623 LHV 631
LHV
Sbjct: 200 LHV 202
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = +2
Query: 443 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 622
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 623 LHV 631
LHV
Sbjct: 200 LHV 202
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/59 (42%), Positives = 41/59 (69%)
Frame = +2
Query: 455 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHV 631
N VG+L+GP+G T++QL++D CK+ + G+G +D KEE LR+ + + HL + +HV
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVG--WEHLKEPIHV 185
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = +2
Query: 440 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYS 607
++PK+NFVG++LGP+G T+KQL+++T C++ V GR S E + +S P +S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKS-TPSFS 135
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +2
Query: 281 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 460
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 461 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 559
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +2
Query: 281 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 460
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 461 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 559
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 48.8 bits (111), Expect = 5e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +2
Query: 113 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 286
L+++A+K+ + + ++ + + + +E K Y+ L EK +L
Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
Query: 287 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 463
++ F LID+E+ KV + S+ + P +NFV
Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129
Query: 464 GKLLGPKGNTMKQLQEDTLCKMAVLGR 544
G+LLGP+G T KQL+ T C++ +LGR
Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 47.2 bits (107), Expect = 1e-05
Identities = 16/36 (44%), Positives = 28/36 (77%)
Frame = +2
Query: 443 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 550
+P +NF+G+++GP+G T KQL++DT C++ + G S
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 449 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLH 628
K N++G++LGP G + + ++ + + G GS+R++ +E +R+ + HL + LH
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVRK----RNEHLEEPLH 206
Query: 629 V 631
V
Sbjct: 207 V 207
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 455 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDL 625
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQL 156
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 455 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDL 625
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQL 219
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 455 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDL 625
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQL 197
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 461 VGKLLGPKGNTMKQLQEDT 517
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 461 VGKLLGPKGNTMKQLQEDT 517
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 461 VGKLLGPKGNTMKQLQEDT 517
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 555 LIEPLPSTAILHSVSSCNCFIVFPF 481
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 176 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 352
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 458 FVGKLLGPKGNTMKQLQEDTLCKM 529
F+GKL+G T+ L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,639
Number of Sequences: 27780
Number of extensions: 304127
Number of successful extensions: 790
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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