Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D15
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    31   0.21 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    30   0.47 
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    27   3.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.3  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.8  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   7.7  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +2

Query: 455 DWMGKAIGLPPAFLALEEGSKGGGVIQGSASECVLVSMLAARANGIKRLKHQFPNV 622
           D   +A+   P F  L +  +GGGVI   A EC+ +  L   +N +  +K  FPNV
Sbjct: 173 DGPAEALFQKPYFQLLSDALRGGGVITTQA-ECMWIH-LGVISNVLTAVKTVFPNV 226


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 500 LEEGSKGGGVIQGSASECVLVSMLAA---RANGIKRLKHQFPNVDEGLLLSKLIAYCSKE 670
           LEE  +GG V+ GS+S     S        A G K  + +   +     + K IAY +K 
Sbjct: 28  LEEEERGGNVVVGSSSANANASTAETGKKSAGGSKPKRRRGERIPPSKRIRKAIAYVNKY 87

Query: 671 AHSC 682
           A  C
Sbjct: 88  ASGC 91


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 407 KNQCIRCQQTTYLRVSKGT 351
           +NQ  RC  +TYL++S GT
Sbjct: 169 RNQVARCLHSTYLKLSAGT 187


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 316 STFSRILSGRQRVPFDTRRYVVCWHRMHWFFLGS 417
           +T S +L    R+P D RR   C+H   W  + S
Sbjct: 148 TTLSSLLHRHTRLPRDVRRKHTCFHTSVWCDMSS 181


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 323 FHAYFPAGNGYPSILGDMLSAGIGCIGFSWAASPACT 433
           +  YF AGNG P+  G  + A +     S ++S A T
Sbjct: 144 YQVYFGAGNGNPNCAGIAIEAFVSPSSSSSSSSSAAT 180


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 323 FHAYFPAGNGYPSILGDMLSAGIGCIGFSWAASPACT 433
           +  YF AGNG P+  G  + A +     S ++S A T
Sbjct: 144 YQVYFGAGNGNPNCAGIAIEAFVSPSSSSSSSSSAAT 180


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 31  THIVSLSQSHQTSP-KLKKKKPYNGCRRVSCAR*RGGRLHMHLHEH 165
           TH  S + +  TS  K +K+K  +  RR      R G LH H H H
Sbjct: 440 THRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGSLHRHHHHH 485


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 726 KIRSFTKXIMAAFSTHEWASLEQYAINFDSKSPSSTL 616
           KI SFT   +A      + S+EQ+  N    +P   L
Sbjct: 113 KIISFTSLFLATKCNDHYISIEQFCKNMPKTTPEEVL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,528
Number of Sequences: 5004
Number of extensions: 70278
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)