Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_D14
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 38 0.002
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 33 0.039
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 32 0.091
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 31 0.21
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 1.1
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 28 2.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 2.0
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 27 2.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.6
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 3.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 4.5
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 4.5
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.0
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 6.0
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 7.9
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Frame = +2
Query: 185 EFSVGRA-TQNEAIIPFLSISRNHCIFKKTNDNDWT----IEDRSTFGIEINGTKLGKGK 349
+ SVGR+ T N ++ F + ++ ++ D+D ED+S+ G +N +GKG
Sbjct: 61 DVSVGRSNTCNYQLLQFTASYKHFRVYSVLIDDDMDPLVYCEDQSSNGTFLNHRLIGKGN 120
Query: 350 SKRLYHQDIINLEPSGEFLYRYIHSND-DF--ETPRKRFKI 463
S L DI+++ FL++ ++ D DF E +RF I
Sbjct: 121 SVLLSDGDILDVRHCASFLFQQKYTTDNDFHHEYAGERFNI 161
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 33.5 bits (73), Expect = 0.039
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 12/231 (5%)
Frame = +2
Query: 17 LLIVLCFDYKLQFFSLKIRCFLLVSEMNDEILP----KLITCKPLKDEFNHLNEIHLSSN 184
+L++L DYKL+ L + E++ ILP +T + F L S
Sbjct: 248 VLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHG 307
Query: 185 EFSVGRATQNEAIIPFLSISRNHCIFKKTNDND---WTIEDRSTFGIEINGTKL-----G 340
FS+ + N + I D++ W + D E + +K
Sbjct: 308 SFSIYKLNANAHSFKLNVVIEKGIIPPSLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAW 367
Query: 341 KGKSKRLYHQDIINLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDIAYDVKVKF 520
K + + ++L+ F + HS D F K F + N S GDI+ ++ ++
Sbjct: 368 KSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIEKTF-FDVPTNMSSGDIS-EIWLQH 425
Query: 521 EASQKYEIEHIEDKIQNAKQMQTTSLILKQQLELDMDRQIXQLKNDYASQI 673
+ IE I+ + + + ++S + K +L+ I +LKN S I
Sbjct: 426 IFAHNTSIESIQVALLSFQ--NSSSQVSKNKLDKFGALTISELKNAVLSSI 474
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 32.3 bits (70), Expect = 0.091
Identities = 24/100 (24%), Positives = 47/100 (47%)
Frame = +2
Query: 440 TPRKRFKIEKSQNTSDGDIAYDVKVKFEASQKYEIEHIEDKIQNAKQMQTTSLILKQQLE 619
T RK+ I K QN S I + V+ EAS E+ +++ + Q T+ ++ Q E
Sbjct: 300 TLRKKKSIPKKQNESSSTIQKENTVQQEASSSE-----EEAVKSLPETQRTTSRIETQEE 354
Query: 620 LDMDRQIXQLKNDYASQIENLQGEKDEVEKQXVFSLNXGM 739
+ ++ + + ++ N + E + +K SL+ G+
Sbjct: 355 EIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSLSLGV 394
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 31.1 bits (67), Expect = 0.21
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +2
Query: 302 STFGIEINGTKLGKGKSKRLYHQDIINLEPSG---EFLYRYIHSNDDFETPRKRFKIEKS 472
S++GI ++ +LGK K HQ + + +FL RY+ DF + RK K+E
Sbjct: 86 SSYGITLS--QLGKANLKIGEHQTSLAYKARVCYLDFLKRYLVQAKDFHSARK--KLESR 141
Query: 473 QNTSDGDIAYDVKVKFEASQ-KYEIEHIEDKIQNAKQMQTTSLILKQQLELDMDRQIXQL 649
+ + + K K E S+ + +I K + + + +I + +E D +Q+ +L
Sbjct: 142 RQAYESLLQKSFKEKKEDSRLEEDIRLALYKFEESTEQVKNRMIALKDVEADQYQQLTEL 201
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +2
Query: 581 MQTTSLILKQQLELDMDRQIXQLKNDYASQIENLQGEKDEVEKQ 712
+ + S+ + +E+D+ ++ + N SQ+ENLQ E+ +++++
Sbjct: 613 LPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENLQNEERKLQEK 656
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/92 (22%), Positives = 37/92 (40%)
Frame = +2
Query: 356 RLYHQDIINLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDIAYDVKVKFEASQK 535
R +H DI +L G Y+ +F R K+++ + +YD +KF+
Sbjct: 612 RHWHDDIYSLVQLGN---AYMRQAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNA 668
Query: 536 YEIEHIEDKIQNAKQMQTTSLILKQQLELDMD 631
+ + I + +Q LIL + E D
Sbjct: 669 HAAQGIAIILAQNRQFSKALLILSKVREAIKD 700
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 2.0
Identities = 27/129 (20%), Positives = 58/129 (44%)
Frame = +2
Query: 419 HSNDDFETPRKRFKIEKSQNTSDGDIAYDVKVKFEASQKYEIEHIEDKIQNAKQMQTTSL 598
H N + + ++E+ IA + + K EA QK+E +H + + + + +
Sbjct: 530 HDNLSKSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFE-QHFGEGLVGLSEEEIIAY 588
Query: 599 ILKQQLELDMDRQIXQLKNDYASQIENLQGEKDEVEKQXVFSLNXGMXN*QXVRKDXEGK 778
+ E + R + QL D ++ ++ + E ++Q SLN N + ++ +
Sbjct: 589 VTMLSQEEEAKRMV-QLSMD----VDKIEEDFKENDEQATSSLNALSSNHEPPQE--QAN 641
Query: 779 ISELLDQIQ 805
++EL +Q Q
Sbjct: 642 VAELNEQEQ 650
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 386 EPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDIAYDVKVKFEASQKYEIEHIEDKI 565
E S E LY + DF+ KR I + S+ ++ D FEA+ + ++ +I
Sbjct: 162 ELSDEILYLAQDKSADFQWYTKRAAISAIYSASELFMSRDTSPNFEATYNF----VQHRI 217
Query: 566 QNAKQM 583
Q+AK +
Sbjct: 218 QHAKAL 223
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.6
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 4/162 (2%)
Frame = +2
Query: 329 TKLGK-GKSKRLYHQDIINLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDIAYD 505
TKL + K + Q + +L E L + + + T EK +N +
Sbjct: 1373 TKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRF 1432
Query: 506 VKVKFEASQKYEIEHIEDKIQNAKQMQTTSLI-LKQQLELDMDRQIXQLKNDYASQIENL 682
+K E + K + ++ A Q + SL QL+ Q+ + Q E L
Sbjct: 1433 AHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKE---QFEQL 1489
Query: 683 QGEKDEVEKQXVFSLNXGMXN*QXVRKDXEGK--ISELLDQI 802
+ EK+ EK+ S N + + Q D +GK IS L +I
Sbjct: 1490 KSEKERTEKELADSKNE-LEHLQSEAVDADGKTEISNLEKEI 1530
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 80 LLVSEMNDEILPKLITC 130
+L SE+ D ILPKL+ C
Sbjct: 117 ILKSELKDSILPKLVNC 133
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 3.4
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Frame = +2
Query: 380 NLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGD-IAYDVKVKFEASQ----KYEI 544
+L+ +GE Y + S D+ET K +E S S + +++ K+ SQ K ++
Sbjct: 548 DLKQAGENHYSNLSS--DYETQIK--SLESSLTNSQAECVSFQEKINELNSQIDELKLKL 603
Query: 545 EHIEDKIQNAKQMQTTSLILKQQLELDMDRQIXQLKNDYASQIENLQ 685
K Q S + Q +E D + LKN+ + ++NL+
Sbjct: 604 NEANKKYQELAISFENSNVKTQSVEPDNGLSLEALKNENQTLLKNLE 650
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 365 HQDIINLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDIAYDVKVKFEASQKYE 541
HQ +++E S E + S+ E K K+ + +T G +A+D +F ASQ ++
Sbjct: 150 HQPAVSIEESKEAVESTSQSS---EISFKLIKVIEGHHTFVGGLAFDPMGQFLASQSFD 205
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 404 LYRYIHSNDDFETPRKRFKIEK 469
LY ++ S ETPRKR EK
Sbjct: 43 LYDFLESRGKIETPRKRIVFEK 64
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 353 KRLYHQDIINLEPSGEFLYRYIHSNDDFETPRKRFKIEKSQNTSDGDI 496
KR +D++ +EPS L +N+ E RKR +E G +
Sbjct: 75 KRPRAEDLLVIEPSQNSLVPSTQNNEWNEIARKRVSLESDHPDKSGQV 122
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 716 PFVFQLHPFLPVSFLFVMRNHFSTVVSVYPY 624
P +Q + +P + F +N+ STV +VYPY
Sbjct: 452 PIAYQSYSVMPTYWSFP-QNYDSTVPAVYPY 481
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 6.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 794 PIVQIFCLPXLF*XAVNXASXCSMRKPFVFQLHPFLPVSFLFVMRNHFSTVVSVYPYPVL 615
P V +FC P +F + S ++ L P+ +F + HFS V PY L
Sbjct: 320 PFVLLFCEPIVFLLTL----YMSFVYGILYLLLEAYPI--IFAEKRHFSLGVDALPYIGL 373
Query: 614 IV-VLISMMLFAF 579
+V V++ L A+
Sbjct: 374 LVGVILGAALIAY 386
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 467 KSQNTSDGDIAYDVKVKFEASQKYEIEHIEDKIQNAKQ 580
+S+N+ + +++ K + +K E+ +E+K+ NAK+
Sbjct: 101 QSRNSMISSLRSELQEKNQKDKKKEVNKLEEKMTNAKE 138
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 680 SFLFVMRNHFSTVVSVYPYPVL 615
SF F + F+TVV+ Y YP++
Sbjct: 68 SFAFSISGLFATVVTTYSYPLI 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,869
Number of Sequences: 5004
Number of extensions: 61614
Number of successful extensions: 248
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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