Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D12
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.8  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.3  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 38/153 (24%), Positives = 49/153 (32%), Gaps = 1/153 (0%)
 Frame = +1

Query: 301  IPTSPRPSPSSKASLXPYAVDRPVPYPV-EKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 477
            IP  P+PS ++     P     PVP P     VP P  VA P P  V    P   K  V 
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP-SVAAP-PVPVPSGAPPVPKPSVA 1148

Query: 478  VPVHXXXXXXXXXXXXXXXXXXXDRPYPVKVLVPQPYPVEKHVPYPVKXQCPNLTRGETR 657
             P                       P P   + P P P     P P   + P + +    
Sbjct: 1149 AP--PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSV- 1205

Query: 658  AIPRRS*GARTAALPRCEARRCPVKVPVDRPTP 756
             +P     +    +P   A   PV VP  +  P
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 304  PTSPRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVP 453
            P++P   P S +   P A   PVP    K  P P+  A   P  V    P
Sbjct: 992  PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 400  YPVKVAVPQPYEVVKHVPYHVKEYVKV 480
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 131 QLCFLSSSSHWQPLLLPAGKLSRA 60
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 370 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 477
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 556 YPVKVLVPQPYPVEKHVPYPVKXQCPNLTRGETRAIPRRS*GART 690
           Y +   + +  PV+ H   PV+ Q P  T   TR + R++ GA++
Sbjct: 89  YQLAAKLSKKAPVDLHPLRPVRSQTPAYTPMTTRMMYRQTRGAQS 133


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 301 IPTSPRPSPSSKASLXPYA-VDRPVPYPVEKHVPYPVKVAVPQP 429
           +PT P   PS+  SL P A    P+  P    +P    +A P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 PRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKV 414
           P PS S+ +S+ P A    V   V  + PYP ++
Sbjct: 216 PPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,437
Number of Sequences: 5004
Number of extensions: 49082
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)