Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D10
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    31   0.29 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    28   2.0  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    27   2.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   6.2  

>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = -1

Query: 622 HFDFPTVSTCWES----LYSLTEVAKCTCLLFFLAFVALHSNVXRDVELNLHVRERPVFL 455
           HFD+  V + +      LY+L+E  + TCL  F  F+    +      L++     PV++
Sbjct: 273 HFDWKGVKSAFTDFKVYLYALSEFGQDTCLYGFSTFLPAIISGMGYTSLSVQYMTIPVYI 332

Query: 454 SG-ATSVSLLFYVDR 413
            G AT ++  F  DR
Sbjct: 333 LGAATYIAASFLSDR 347


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 526 VALHSNVXRDVELNLHVRERPVFLSGATSV 437
           +A H  + RDV+L+L   E+PV L   T V
Sbjct: 371 LAAHGYIYRDVDLSLETDEKPVKLMVRTEV 400


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 433 EKQKLRQKEIRAAREHVDLAQHPX*RCYGVRQMPEKTEDTCILLLLSSCTETPNMCSLWE 612
           E  KLR+ ++      V+L  HP  R  G+     K  D C+     +C    +   LW 
Sbjct: 117 ESSKLRKLQLHGPLSAVEL--HP--RIPGIIAAGGKENDVCLYSCNPTCKSNIDELELWR 172

Query: 613 SQN 621
           ++N
Sbjct: 173 TEN 175


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 610 PTVSTCWESLYSLTEVAKC--TCLLFF-LAFVALHSNVXRDVE 491
           P+VST W  L+ L ++ +C  +C+ +F      L S+V  ++E
Sbjct: 42  PSVSTLWRLLFELQKMIECEPSCVEYFRQRKEELESHVDSEIE 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,193
Number of Sequences: 5004
Number of extensions: 67601
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)