Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D06
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0156 - 18698375-18698596                                         31   1.3  
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647     29   6.9  
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   6.9  
10_03_0002 - 6858257-6861205                                           28   9.2  

>01_05_0156 - 18698375-18698596
          Length = 73

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 572 RCVQGRSEPRFPRSGR-GHDSSLGVVTETSASGSVWPRAMPRTNRXRSIS 718
           RC QG  E    R+GR G D     V E     S+W R + R  R RS+S
Sbjct: 16  RCEQGEEEAPAMRTGRGGSDGDARDVEEKLRRRSIWTRRVRRV-RLRSVS 64


>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
          Length = 263

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 5   GLNGFDNVAEWWQSEYEVPDFEEQLAKLWEDVKPLYQQLHAYVRKRLRDK 154
           G  G+D  A  W+  YE+   E ++   W   KPL+ + HA    R R +
Sbjct: 43  GNKGYDTNAHGWRFAYELTFPEGEIPSDWGYSKPLWDE-HAKDEARRRHR 91


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 533 HLVVGGLEVFVIDCRALFDPKIFTIKEVPGGGVTNDFSI 417
           HL+V    + V  C  LF+ K F  + V G GV N  SI
Sbjct: 49  HLLVTFCSLHVALCMKLFEHKPFDARTVMGFGVLNGISI 87


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 202 TGQHVGPDVEQHRILHSSLS--GQEGDRRHTSDERRELHSDEDVSNVRRI 345
           TG  V P    H   H SLS  G   +RR    + R +HS  D    RR+
Sbjct: 333 TGSRV-PHFRSHDYRHPSLSITGAGSNRRSRGHDERSVHSPPDHHRERRV 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,459,398
Number of Sequences: 37544
Number of extensions: 470686
Number of successful extensions: 1602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)