Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D06
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   5.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   5.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +2

Query: 602  FPRSGRGHDSSLGV----VTETSASGSVWPRAMPRTN 700
            FP  G GH  ++G      T  SA      ++MPR N
Sbjct: 1748 FPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQN 1784


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 164 KVVSARGPIPAHLLGNMWAQTWNNIESFTR 253
           K VS  G +   L+GN     WN  +S  R
Sbjct: 307 KAVSKNGVLFVGLVGNSAVGCWNEHQSLQR 336


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 378 EKFWKNSIIEKPTDREIV 431
           ++ W  +I E+PT  E++
Sbjct: 290 KQMWSQNITERPTTNEVI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,321
Number of Sequences: 438
Number of extensions: 4536
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)